The 2.0 version of rSNPBase

Variant report

Variant rs3897646
Chromosome Location chr18:43569556-43569557
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:43554600-43571400 Weak transcription Primary T helper naive cells fromperipheralblood blood
2 chr18:43557200-43573400 Weak transcription NHLF lung
3 chr18:43558400-43569600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr18:43558800-43608000 Weak transcription Pancreas Pancrea
5 chr18:43560400-43573600 Weak transcription Fetal Intestine Large intestine
6 chr18:43560400-43582600 Weak transcription Fetal Intestine Small intestine
7 chr18:43560400-43597600 Weak transcription Left Ventricle heart
8 chr18:43560600-43575600 Weak transcription Ovary ovary
9 chr18:43560600-43591600 Weak transcription Duodenum Mucosa Duodenum
10 chr18:43561000-43569600 Weak transcription K562 blood
11 chr18:43561000-43573400 Weak transcription Placenta Placenta
12 chr18:43561000-43576800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
13 chr18:43562400-43572400 Weak transcription NHDF-Ad bronchial
14 chr18:43562400-43583200 Weak transcription Lung lung
15 chr18:43562600-43571800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr18:43562600-43585600 Strong transcription Breast Myoepithelial Primary Cells Breast
17 chr18:43563400-43592000 Weak transcription Psoas Muscle Psoas
18 chr18:43564000-43573400 Weak transcription HSMMtube muscle
19 chr18:43564600-43576000 Weak transcription Primary T killer naive cells fromperipheralblood blood
20 chr18:43564800-43574200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr18:43564800-43576400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
22 chr18:43565000-43573600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr18:43565400-43588800 Weak transcription Skeletal Muscle Male skeletal muscle
24 chr18:43565400-43590800 Weak transcription Colon Smooth Muscle Colon
25 chr18:43565600-43588800 Weak transcription Stomach Smooth Muscle stomach
26 chr18:43566200-43574200 Strong transcription Liver Liver
27 chr18:43566200-43576400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr18:43566200-43577200 Strong transcription Monocytes-CD14+_RO01746 blood
29 chr18:43566400-43577600 Strong transcription Primary hematopoietic stem cells short term culture blood
30 chr18:43566800-43572200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr18:43566800-43572200 Weak transcription Fetal Lung lung
32 chr18:43566800-43572400 Strong transcription Primary hematopoietic stem cells blood
33 chr18:43567000-43571600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr18:43567000-43572200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr18:43567200-43569600 Strong transcription Primary monocytes fromperipheralblood blood
36 chr18:43567200-43571600 Strong transcription Spleen Spleen
37 chr18:43567200-43571800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr18:43567400-43574200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr18:43567800-43570000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr18:43567800-43571200 Strong transcription Primary T helper cells fromperipheralblood blood
41 chr18:43567800-43578400 Weak transcription Fetal Adrenal Gland Adrenal Gland
42 chr18:43567800-43588800 Weak transcription NHEK skin
43 chr18:43568000-43574000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
44 chr18:43568000-43576200 Strong transcription Primary neutrophils fromperipheralblood blood
45 chr18:43568000-43583200 Weak transcription Esophagus oesophagus
46 chr18:43568400-43570200 Strong transcription Osteobl bone
47 chr18:43568400-43578200 Weak transcription Rectal Mucosa Donor 29 rectum
48 chr18:43568600-43569600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
49 chr18:43568600-43569600 Weak transcription Aorta Aorta
50 chr18:43568600-43596800 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015