The 2.0 version of rSNPBase

Variant report

Variant rs4890609
Chromosome Location chr18:43567993-43567994
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:43554600-43568000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
2 chr18:43554600-43568800 Weak transcription Primary T helper cells PMA-I stimulated --
3 chr18:43554600-43571400 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr18:43557200-43573400 Weak transcription NHLF lung
5 chr18:43558400-43569600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr18:43558800-43608000 Weak transcription Pancreas Pancrea
7 chr18:43560400-43573600 Weak transcription Fetal Intestine Large intestine
8 chr18:43560400-43582600 Weak transcription Fetal Intestine Small intestine
9 chr18:43560400-43597600 Weak transcription Left Ventricle heart
10 chr18:43560600-43575600 Weak transcription Ovary ovary
11 chr18:43560600-43591600 Weak transcription Duodenum Mucosa Duodenum
12 chr18:43561000-43569600 Weak transcription K562 blood
13 chr18:43561000-43573400 Weak transcription Placenta Placenta
14 chr18:43561000-43576800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr18:43562400-43572400 Weak transcription NHDF-Ad bronchial
16 chr18:43562400-43583200 Weak transcription Lung lung
17 chr18:43562600-43571800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr18:43562600-43585600 Strong transcription Breast Myoepithelial Primary Cells Breast
19 chr18:43563400-43592000 Weak transcription Psoas Muscle Psoas
20 chr18:43564000-43573400 Weak transcription HSMMtube muscle
21 chr18:43564600-43568400 Weak transcription Primary T cells fromperipheralblood blood
22 chr18:43564600-43576000 Weak transcription Primary T killer naive cells fromperipheralblood blood
23 chr18:43564800-43574200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr18:43564800-43576400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
25 chr18:43565000-43568200 Weak transcription Aorta Aorta
26 chr18:43565000-43573600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr18:43565400-43588800 Weak transcription Skeletal Muscle Male skeletal muscle
28 chr18:43565400-43590800 Weak transcription Colon Smooth Muscle Colon
29 chr18:43565600-43569200 Weak transcription Skeletal Muscle Female skeletal muscle
30 chr18:43565600-43588800 Weak transcription Stomach Smooth Muscle stomach
31 chr18:43566200-43574200 Strong transcription Liver Liver
32 chr18:43566200-43576400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr18:43566200-43577200 Strong transcription Monocytes-CD14+_RO01746 blood
34 chr18:43566400-43577600 Strong transcription Primary hematopoietic stem cells short term culture blood
35 chr18:43566800-43568600 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
36 chr18:43566800-43569000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr18:43566800-43572200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr18:43566800-43572200 Weak transcription Fetal Lung lung
39 chr18:43566800-43572400 Strong transcription Primary hematopoietic stem cells blood
40 chr18:43567000-43571600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr18:43567000-43572200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr18:43567200-43569000 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
43 chr18:43567200-43569200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
44 chr18:43567200-43569400 Strong transcription HMEC breast
45 chr18:43567200-43569600 Strong transcription Primary monocytes fromperipheralblood blood
46 chr18:43567200-43571600 Strong transcription Spleen Spleen
47 chr18:43567200-43571800 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr18:43567400-43568600 Strong transcription Adipose Nuclei Adipose
49 chr18:43567400-43574200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr18:43567600-43568000 Genic enhancers Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015