Variant report

Variant	rs4097309
Chromosome Location	chr13:67806364-67806365
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:67804827..67806801-chr13:67815809..67818505,2	MCF-7	breast:
2	chr13:67804547..67807310-chr13:67807944..67812554,4	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1325675	0.88[ASN][1000 genomes]
rs1325677	0.93[ASN][1000 genomes]
rs1325678	0.90[ASN][1000 genomes]
rs1925750	0.87[ASN][1000 genomes]
rs1983871	0.80[ASN][1000 genomes]
rs2147998	0.80[ASN][1000 genomes]
rs2182229	0.81[ASN][1000 genomes]
rs2325025	0.82[ASN][1000 genomes]
rs2325027	0.82[ASN][1000 genomes]
rs3812859	0.85[ASN][1000 genomes]
rs3812860	0.84[ASN][1000 genomes]
rs4242930	0.88[ASN][1000 genomes]
rs4614602	0.89[ASN][1000 genomes]
rs7489531	0.80[ASN][1000 genomes]
rs8002263	0.85[ASN][1000 genomes]
rs9529206	0.82[ASN][1000 genomes]
rs9541034	0.82[ASN][1000 genomes]
rs9541035	0.82[ASN][1000 genomes]
rs9541039	0.90[ASN][1000 genomes]
rs9541041	0.90[ASN][1000 genomes]
rs9571740	0.82[ASN][1000 genomes]
rs9571744	0.93[ASN][1000 genomes]
rs994245	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67800800-67806600	Active TSS	Brain Cingulate Gyrus	brain
2	chr13:67801200-67810000	Active TSS	Right Atrium	heart
3	chr13:67801600-67808400	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr13:67802000-67806400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:67802400-67809400	Active TSS	A549	lung
6	chr13:67803200-67806800	Active TSS	Fetal Lung	lung
7	chr13:67804000-67806400	Active TSS	Fetal Muscle Leg	muscle
8	chr13:67804400-67811400	Active TSS	Stomach Smooth Muscle	stomach
9	chr13:67805400-67807200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr13:67805600-67810400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr13:67805800-67811200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr13:67806000-67806400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
13	chr13:67806000-67806600	Enhancers	Brain Substantia Nigra	brain
14	chr13:67806000-67806800	Weak transcription	Brain Hippocampus Middle	brain
15	chr13:67806000-67807200	Active TSS	Adipose Nuclei	Adipose
16	chr13:67806000-67809400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr13:67806200-67806400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:67806200-67806600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr13:67806200-67806600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr13:67806200-67806800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr13:67806200-67806800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr13:67806200-67806800	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr13:67806200-67807400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr13:67806200-67807400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr13:67806200-67808000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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