Variant report

Variant	rs9541034
Chromosome Location	chr13:67794333-67794334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12857493	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1325677	0.83[ASN][1000 genomes]
rs1325678	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1925750	0.90[ASN][1000 genomes]
rs1983871	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1983949	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2147998	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2182229	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2325025	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2325027	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3812859	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3812860	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4097309	0.82[ASN][1000 genomes]
rs4884719	0.82[ASN][1000 genomes]
rs4884720	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs700329	0.90[ASN][1000 genomes]
rs71427643	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7489531	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7985679	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7992750	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8002263	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9317650	0.83[ASN][1000 genomes]
rs9317651	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9317655	0.87[ASN][1000 genomes]
rs9529199	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9529206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541035	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541039	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9541041	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9571740	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9571744	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67731400-67795400	Weak transcription	Primary B cells from cord blood	blood
2	chr13:67756200-67795800	Weak transcription	Left Ventricle	heart
3	chr13:67772200-67797200	Weak transcription	Fetal Kidney	kidney
4	chr13:67783800-67795200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr13:67789600-67794400	Enhancers	Brain Substantia Nigra	brain
6	chr13:67790000-67795000	Enhancers	Brain Angular Gyrus	brain
7	chr13:67790800-67795800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr13:67791400-67795800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:67792200-67794400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr13:67792200-67797200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:67792400-67795800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr13:67792600-67795400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr13:67792600-67795600	Enhancers	Brain Anterior Caudate	brain
14	chr13:67792800-67795800	Weak transcription	Fetal Heart	heart
15	chr13:67793400-67794600	Weak transcription	Brain Hippocampus Middle	brain
16	chr13:67793400-67794600	Weak transcription	Fetal Brain Female	brain
17	chr13:67793600-67794800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr13:67793600-67795000	Weak transcription	Brain Germinal Matrix	brain
19	chr13:67793600-67795200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr13:67793600-67795800	Weak transcription	Fetal Brain Male	brain
21	chr13:67793800-67795600	Enhancers	A549	lung
22	chr13:67793800-67795800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr13:67793800-67795800	Weak transcription	HSMM	muscle
24	chr13:67794200-67795000	Weak transcription	Brain Inferior Temporal Lobe	brain

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