Variant report

Variant	rs9541039
Chromosome Location	chr13:67821662-67821663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12857493	0.88[CEU][hapmap]
rs1325675	0.82[ASN][1000 genomes]
rs1325677	0.97[ASN][1000 genomes]
rs1325678	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1925750	0.88[ASN][1000 genomes]
rs1983871	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1983949	0.88[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2147998	0.96[CEU][hapmap];0.83[CHB][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2182229	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2325025	0.86[ASW][hapmap];0.96[CEU][hapmap];0.83[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.85[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2325027	0.86[ASW][hapmap];0.96[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.83[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2985931	0.95[CHB][hapmap];0.82[CHD][hapmap];0.86[GIH][hapmap];0.91[JPT][hapmap]
rs3812859	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3812860	1.00[ASW][hapmap];0.96[CEU][hapmap];0.83[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4097309	0.90[ASN][1000 genomes]
rs4242930	0.82[ASN][1000 genomes]
rs4614602	0.84[ASN][1000 genomes]
rs4884720	0.81[CEU][hapmap];0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs71427643	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7489531	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7985679	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7992750	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8002263	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9317650	0.80[GIH][hapmap]
rs9317651	0.96[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9529199	0.88[CEU][hapmap];0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs9529206	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9541034	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9541035	0.96[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9541041	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9571740	0.86[ASW][hapmap];0.96[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.80[LWK][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9571744	0.97[ASN][1000 genomes]
rs9571745	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs994245	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv562140	chr13:67820503-67858550	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67821200-67822000	Enhancers	Fetal Intestine Small	intestine
2	chr13:67821400-67821800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links