Variant report

Variant	rs1983871
Chromosome Location	chr13:67790614-67790615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:67780012..67782113-chr13:67789906..67791618,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12857493	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1325677	0.83[ASN][1000 genomes]
rs1325678	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1925750	0.88[ASN][1000 genomes]
rs1983949	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2147998	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182229	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2325025	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2325027	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3812859	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3812860	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4097309	0.80[ASN][1000 genomes]
rs4884719	0.85[ASN][1000 genomes]
rs4884720	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs700329	0.87[ASN][1000 genomes]
rs71427643	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7489531	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7985679	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7992750	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8002263	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9317650	0.86[ASN][1000 genomes]
rs9317651	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9317655	0.90[ASN][1000 genomes]
rs9529199	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9529206	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9541034	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9541035	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9541039	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9541041	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9571740	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9571744	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv976243	chr13:67790232-67794102	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67731400-67795400	Weak transcription	Primary B cells from cord blood	blood
2	chr13:67756200-67795800	Weak transcription	Left Ventricle	heart
3	chr13:67772200-67797200	Weak transcription	Fetal Kidney	kidney
4	chr13:67779400-67791000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr13:67780200-67791400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr13:67783800-67795200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr13:67784000-67791000	Weak transcription	Brain Anterior Caudate	brain
8	chr13:67784600-67792000	Weak transcription	A549	lung
9	chr13:67787600-67791000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:67788600-67791000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr13:67789600-67791800	Enhancers	Brain Cingulate Gyrus	brain
12	chr13:67789600-67794400	Enhancers	Brain Substantia Nigra	brain
13	chr13:67790000-67795000	Enhancers	Brain Angular Gyrus	brain
14	chr13:67790200-67790800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr13:67790200-67791000	Enhancers	Brain Hippocampus Middle	brain
16	chr13:67790200-67791800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr13:67790400-67792600	Weak transcription	HSMM	muscle

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