Variant report

Variant	rs1925750
Chromosome Location	chr13:67831033-67831034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1325675	0.80[ASN][1000 genomes]
rs1325677	0.84[ASN][1000 genomes]
rs1325678	0.88[ASN][1000 genomes]
rs1983871	0.88[ASN][1000 genomes]
rs1983949	0.84[ASN][1000 genomes]
rs2147998	0.88[ASN][1000 genomes]
rs2182229	0.87[ASN][1000 genomes]
rs2325025	0.90[ASN][1000 genomes]
rs2325027	0.90[ASN][1000 genomes]
rs3812859	0.93[ASN][1000 genomes]
rs3812860	0.92[ASN][1000 genomes]
rs4097309	0.87[ASN][1000 genomes]
rs4242930	0.80[ASN][1000 genomes]
rs4614602	0.81[ASN][1000 genomes]
rs4884720	0.84[ASN][1000 genomes]
rs700329	0.81[ASN][1000 genomes]
rs71427643	0.86[ASN][1000 genomes]
rs7489531	0.88[ASN][1000 genomes]
rs7985679	0.84[ASN][1000 genomes]
rs7992750	0.87[ASN][1000 genomes]
rs8002263	0.93[ASN][1000 genomes]
rs9317651	0.87[ASN][1000 genomes]
rs9529199	0.84[ASN][1000 genomes]
rs9529206	0.90[ASN][1000 genomes]
rs9541034	0.90[ASN][1000 genomes]
rs9541035	0.90[ASN][1000 genomes]
rs9541039	0.88[ASN][1000 genomes]
rs9541041	0.88[ASN][1000 genomes]
rs9571740	0.90[ASN][1000 genomes]
rs9571744	0.84[ASN][1000 genomes]
rs994245	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv562140	chr13:67820503-67858550	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67825400-67833600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:67828200-67832600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:67830800-67832000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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