Variant report

Variant	rs9571740
Chromosome Location	chr13:67800935-67800936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12857493	0.92[CEU][hapmap];0.91[CHB][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1325677	0.83[ASN][1000 genomes]
rs1325678	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1925750	0.90[ASN][1000 genomes]
rs1983871	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1983949	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2147998	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2182229	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2325025	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2325027	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2985931	0.82[GIH][hapmap]
rs3812859	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3812860	0.86[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4097309	0.82[ASN][1000 genomes]
rs4884719	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs4884720	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs700329	0.90[ASN][1000 genomes]
rs71427643	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7489531	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7985679	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7992750	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8002263	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9317650	0.91[CHB][hapmap];0.91[CHD][hapmap];0.81[GIH][hapmap];0.83[MEX][hapmap];0.83[ASN][1000 genomes]
rs9317651	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9317655	0.87[ASN][1000 genomes]
rs9529199	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9529206	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541034	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541035	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541039	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9541041	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9571744	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67795400-67805600	Active TSS	Brain Substantia Nigra	brain
2	chr13:67796200-67801800	Weak transcription	Psoas Muscle	Psoas
3	chr13:67796200-67803000	Weak transcription	Gastric	stomach
4	chr13:67796200-67806000	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr13:67796200-67806200	Active TSS	Brain Angular Gyrus	brain
6	chr13:67797200-67806000	Active TSS	Right Ventricle	heart
7	chr13:67797600-67806200	Active TSS	Fetal Kidney	kidney
8	chr13:67798600-67801000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr13:67798600-67801600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr13:67798600-67801600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr13:67798600-67801600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr13:67798600-67802200	Weak transcription	Thymus	Thymus
13	chr13:67798600-67802200	Weak transcription	NH-A	brain
14	chr13:67798600-67802400	Weak transcription	HSMMtube	muscle
15	chr13:67798600-67802400	Weak transcription	NHDF-Ad	bronchial
16	chr13:67798600-67802600	Weak transcription	HUVEC	blood vessel
17	chr13:67798600-67802600	Weak transcription	Osteobl	bone
18	chr13:67798600-67802800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr13:67798600-67803000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr13:67798600-67803200	Weak transcription	K562	blood
21	chr13:67798800-67801200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr13:67798800-67801800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr13:67798800-67802200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr13:67798800-67802200	Enhancers	Adipose Nuclei	Adipose
25	chr13:67798800-67802400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr13:67798800-67802600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr13:67798800-67803000	Weak transcription	Colon Smooth Muscle	Colon
28	chr13:67799400-67801400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr13:67799400-67801600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr13:67799400-67801600	Genic enhancers	Primary B cells from cord blood	blood
31	chr13:67799400-67802000	Strong transcription	Fetal Muscle Leg	muscle
32	chr13:67799400-67802600	Transcr. at gene 5' and 3'	HSMM	muscle
33	chr13:67799600-67802400	Transcr. at gene 5' and 3'	A549	lung
34	chr13:67799600-67802800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr13:67799800-67801000	Weak transcription	Dnd41	blood
36	chr13:67799800-67805800	Active TSS	Brain Anterior Caudate	brain
37	chr13:67799800-67805800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr13:67800000-67801400	Weak transcription	Fetal Thymus	thymus
39	chr13:67800200-67801000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr13:67800200-67801400	Weak transcription	Fetal Lung	lung
41	chr13:67800200-67801400	Weak transcription	Lung	lung
42	chr13:67800200-67803600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr13:67800200-67805600	Active TSS	Fetal Brain Female	brain
44	chr13:67800200-67806000	Active TSS	Left Ventricle	heart
45	chr13:67800400-67801000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr13:67800400-67801200	Strong transcription	Fetal Muscle Trunk	muscle
47	chr13:67800400-67801400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr13:67800400-67806000	Active TSS	Brain Hippocampus Middle	brain
49	chr13:67800600-67801000	Flanking Active TSS	Brain Germinal Matrix	brain
50	chr13:67800600-67801000	Active TSS	Fetal Brain Male	brain

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