Variant report

Variant	rs71427643
Chromosome Location	chr13:67787267-67787268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12857493	0.85[ASN][1000 genomes]
rs1325677	0.81[ASN][1000 genomes]
rs1325678	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1925750	0.86[ASN][1000 genomes]
rs1983871	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1983949	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2147998	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2182229	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2325025	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2325027	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3812859	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3812860	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4884719	0.85[ASN][1000 genomes]
rs4884720	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs700329	0.85[ASN][1000 genomes]
rs7489531	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7985679	0.83[ASN][1000 genomes]
rs7992750	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8002263	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9317650	0.85[ASN][1000 genomes]
rs9317651	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9317655	0.88[ASN][1000 genomes]
rs9529199	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9529206	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9541034	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9541035	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9541039	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9541041	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9571740	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9571744	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67731400-67795400	Weak transcription	Primary B cells from cord blood	blood
2	chr13:67756200-67795800	Weak transcription	Left Ventricle	heart
3	chr13:67772200-67797200	Weak transcription	Fetal Kidney	kidney
4	chr13:67779400-67791000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr13:67780000-67787600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr13:67780200-67791400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:67783800-67795200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr13:67784000-67791000	Weak transcription	Brain Anterior Caudate	brain
9	chr13:67784400-67789600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr13:67784600-67787600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr13:67784600-67792000	Weak transcription	A549	lung
12	chr13:67784800-67788000	Weak transcription	HSMM	muscle
13	chr13:67784800-67788400	Weak transcription	Brain Angular Gyrus	brain
14	chr13:67785000-67790200	Weak transcription	Brain Hippocampus Middle	brain
15	chr13:67785600-67789600	Weak transcription	Brain Substantia Nigra	brain

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