Variant report

Variant	rs2325025
Chromosome Location	chr13:67796127-67796128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12857493	0.92[CEU][hapmap];0.91[CHB][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1325677	0.83[ASN][1000 genomes]
rs1325678	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1925750	0.90[ASN][1000 genomes]
rs1983871	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1983949	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2147998	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2182229	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2325027	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2985931	0.82[GIH][hapmap]
rs3812859	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3812860	0.86[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4097309	0.82[ASN][1000 genomes]
rs4884719	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs4884720	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs700329	0.90[ASN][1000 genomes]
rs71427643	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7489531	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7985679	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7992750	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8002263	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9317650	0.91[CHB][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];0.83[ASN][1000 genomes]
rs9317651	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9317655	0.87[ASN][1000 genomes]
rs9529199	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9529206	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541034	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541035	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9541039	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9541041	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9571740	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9571744	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67772200-67797200	Weak transcription	Fetal Kidney	kidney
2	chr13:67792200-67797200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr13:67794600-67800000	Active TSS	Fetal Brain Female	brain
4	chr13:67795000-67798200	Enhancers	Dnd41	blood
5	chr13:67795200-67796200	Enhancers	Primary B cells from peripheral blood	blood
6	chr13:67795200-67797000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:67795400-67805600	Active TSS	Brain Substantia Nigra	brain
8	chr13:67795600-67796200	Enhancers	Adipose Nuclei	Adipose
9	chr13:67795600-67796200	Flanking Active TSS	Brain Anterior Caudate	brain
10	chr13:67795600-67796200	Flanking Active TSS	A549	lung
11	chr13:67795600-67796400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr13:67795800-67796200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:67795800-67796200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr13:67795800-67796200	Flanking Active TSS	Primary B cells from cord blood	blood
15	chr13:67795800-67796200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr13:67795800-67796200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr13:67795800-67796200	Enhancers	Liver	Liver
18	chr13:67795800-67796200	Flanking Active TSS	Brain Angular Gyrus	brain
19	chr13:67795800-67796200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
20	chr13:67795800-67796200	Active TSS	Fetal Brain Male	brain
21	chr13:67795800-67796200	Enhancers	Fetal Muscle Leg	muscle
22	chr13:67795800-67796200	Enhancers	Fetal Thymus	thymus
23	chr13:67795800-67796200	Enhancers	Psoas Muscle	Psoas
24	chr13:67795800-67796200	Enhancers	Thymus	Thymus
25	chr13:67795800-67796200	Flanking Active TSS	NHDF-Ad	bronchial
26	chr13:67795800-67796200	Active TSS	Osteobl	bone
27	chr13:67795800-67796400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr13:67795800-67796400	Active TSS	Right Ventricle	heart
29	chr13:67795800-67797000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr13:67795800-67797200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr13:67795800-67797200	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr13:67795800-67798200	Enhancers	Fetal Heart	heart
33	chr13:67795800-67798200	Enhancers	Fetal Lung	lung
34	chr13:67795800-67798200	Enhancers	HSMM	muscle
35	chr13:67795800-67799600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr13:67795800-67799800	Active TSS	Right Atrium	heart
37	chr13:67796000-67796200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr13:67796000-67796200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr13:67796000-67796200	Active TSS	Brain Cingulate Gyrus	brain
40	chr13:67796000-67796200	Flanking Active TSS	Brain Germinal Matrix	brain
41	chr13:67796000-67796200	Enhancers	Gastric	stomach
42	chr13:67796000-67796200	Flanking Active TSS	Left Ventricle	heart
43	chr13:67796000-67796200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr13:67796000-67796200	Flanking Active TSS	HSMMtube	muscle
45	chr13:67796000-67796200	Enhancers	K562	blood
46	chr13:67796000-67797400	Weak transcription	NH-A	brain
47	chr13:67796000-67798200	Weak transcription	Primary T cells from cord blood	blood
48	chr13:67796000-67798600	Weak transcription	Colon Smooth Muscle	Colon
49	chr13:67796000-67799600	Active TSS	Brain Hippocampus Middle	brain
50	chr13:67796000-67799600	Weak transcription	Placenta Amnion	Placenta Amnion

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