Variant report

Variant	rs4968588
Chromosome Location	chr17:59751234-59751235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10221278	0.84[EUR][1000 genomes]
rs10438771	0.82[EUR][1000 genomes]
rs10468558	0.81[EUR][1000 genomes]
rs10515206	0.80[EUR][1000 genomes]
rs10853038	0.82[EUR][1000 genomes]
rs10853039	0.83[EUR][1000 genomes]
rs11079445	0.81[EUR][1000 genomes]
rs11079446	0.82[EUR][1000 genomes]
rs11079448	0.82[EUR][1000 genomes]
rs11650471	0.82[EUR][1000 genomes]
rs11651510	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12449319	0.82[EUR][1000 genomes]
rs12450027	0.80[EUR][1000 genomes]
rs12451862	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12453293	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12453801	0.82[EUR][1000 genomes]
rs12453966	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12603485	0.80[EUR][1000 genomes]
rs12603617	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12937232	0.83[EUR][1000 genomes]
rs1541346	0.80[EUR][1000 genomes]
rs16945500	0.82[EUR][1000 genomes]
rs17532528	0.81[EUR][1000 genomes]
rs2040608	0.80[EUR][1000 genomes]
rs2188731	0.80[EUR][1000 genomes]
rs2214184	0.84[EUR][1000 genomes]
rs2378874	0.80[EUR][1000 genomes]
rs2378875	0.80[EUR][1000 genomes]
rs2378884	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2890012	0.82[EUR][1000 genomes]
rs2890013	0.84[EUR][1000 genomes]
rs36031690	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4309463	0.83[EUR][1000 genomes]
rs4343344	0.83[EUR][1000 genomes]
rs4580256	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4968444	0.83[EUR][1000 genomes]
rs4968447	0.83[EUR][1000 genomes]
rs4968577	0.80[EUR][1000 genomes]
rs4968579	0.82[EUR][1000 genomes]
rs4968580	0.82[EUR][1000 genomes]
rs4968582	0.82[EUR][1000 genomes]
rs4968584	0.82[EUR][1000 genomes]
rs4968585	0.82[EUR][1000 genomes]
rs55797010	0.82[EUR][1000 genomes]
rs56284136	0.82[EUR][1000 genomes]
rs57099937	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57393813	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61599541	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62070615	0.82[EUR][1000 genomes]
rs62070616	0.82[EUR][1000 genomes]
rs62070617	0.82[EUR][1000 genomes]
rs62070624	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67273191	0.80[EUR][1000 genomes]
rs67938055	0.82[EUR][1000 genomes]
rs717961	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs717962	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7207074	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7212423	0.83[EUR][1000 genomes]
rs7213470	0.83[EUR][1000 genomes]
rs7213587	0.83[EUR][1000 genomes]
rs7213759	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7220688	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7220719	0.81[EUR][1000 genomes]
rs72841508	0.82[EUR][1000 genomes]
rs8074949	0.82[EUR][1000 genomes]
rs8075370	0.83[EUR][1000 genomes]
rs8182296	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9303449	0.82[EUR][1000 genomes]
rs9807012	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9896013	0.80[EUR][1000 genomes]
rs9897450	0.83[EUR][1000 genomes]
rs9901428	0.81[EUR][1000 genomes]
rs9903041	0.81[EUR][1000 genomes]
rs9904294	0.83[EUR][1000 genomes]
rs9905870	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59751000-59777200	Weak transcription	HepG2	liver

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