Variant report

Variant	rs9896013
Chromosome Location	chr17:59697852-59697853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59697423..59700025-chr20:45988950..45991372,2	MCF-7	breast:
2	chr17:59696755..59698518-chr17:59922887..59924603,2	MCF-7	breast:
3	chr17:56707639..56710038-chr17:59695911..59698414,2	MCF-7	breast:
4	chr17:59695153..59698102-chr21:39816104..39818825,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000212195	Chromatin interaction
ENSG00000157554	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10221278	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10438771	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10468558	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10515206	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10515207	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10853038	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10853039	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11079445	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079446	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079448	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11650471	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11651510	0.86[EUR][1000 genomes]
rs12449319	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12449902	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12449934	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12450027	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12451862	0.86[EUR][1000 genomes]
rs12453293	0.85[EUR][1000 genomes]
rs12453801	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12453966	0.85[EUR][1000 genomes]
rs12603485	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12603617	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12937232	0.80[EUR][1000 genomes]
rs1541346	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945500	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17532528	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2040608	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2158006	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2188731	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2214184	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2378874	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2378875	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2378884	0.84[EUR][1000 genomes]
rs2890012	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2890013	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36031690	0.82[EUR][1000 genomes]
rs4309463	0.80[EUR][1000 genomes]
rs4343344	0.80[EUR][1000 genomes]
rs4580256	0.85[EUR][1000 genomes]
rs4968444	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4968447	0.80[EUR][1000 genomes]
rs4968577	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968579	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968580	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968582	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4968584	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4968585	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4968588	0.80[EUR][1000 genomes]
rs55797010	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55944442	0.94[ASN][1000 genomes]
rs56284136	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57099937	0.85[EUR][1000 genomes]
rs57393813	0.85[EUR][1000 genomes]
rs61599541	0.84[EUR][1000 genomes]
rs62070615	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62070616	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62070617	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62070624	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67273191	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67938055	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs717961	0.85[EUR][1000 genomes]
rs717962	0.86[EUR][1000 genomes]
rs7207074	0.85[EUR][1000 genomes]
rs7212423	0.80[EUR][1000 genomes]
rs7213470	0.80[EUR][1000 genomes]
rs7213587	0.80[EUR][1000 genomes]
rs7213759	0.84[EUR][1000 genomes]
rs7220688	0.85[EUR][1000 genomes]
rs72841508	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8075370	0.80[EUR][1000 genomes]
rs8182296	0.85[EUR][1000 genomes]
rs9303449	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9807012	0.90[EUR][1000 genomes]
rs9897450	0.80[EUR][1000 genomes]
rs9901428	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9903041	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9904294	0.80[EUR][1000 genomes]
rs9905870	0.83[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59693600-59701200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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