Variant report

Variant	rs11079446
Chromosome Location	chr17:59705217-59705218
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59700832..59702613-chr17:59704531..59707151,3	MCF-7	breast:
2	chr17:59703124..59705471-chr17:59939704..59941591,2	MCF-7	breast:
3	chr17:59693752..59696343-chr17:59703736..59707002,4	MCF-7	breast:
4	chr17:59703865..59706835-chr17:59722983..59724924,2	MCF-7	breast:
5	chr17:59698533..59700055-chr17:59703840..59706711,2	MCF-7	breast:
6	chr16:1824677..1826608-chr17:59703758..59706593,2	MCF-7	breast:
7	chr17:59678271..59681005-chr17:59702144..59706543,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136492	Chromatin interaction
ENSG00000197774	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10221278	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10438771	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10468558	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10515206	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10515207	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10853038	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10853039	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11079445	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079448	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11650471	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11651510	0.87[EUR][1000 genomes]
rs12449319	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12449902	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12449934	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12450027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12451862	0.87[EUR][1000 genomes]
rs12453293	0.86[EUR][1000 genomes]
rs12453801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12453966	0.86[EUR][1000 genomes]
rs12603485	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12603617	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12937232	0.82[EUR][1000 genomes]
rs1541346	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945500	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17532528	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2040608	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2158006	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2188731	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2214184	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2378874	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2378875	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2378884	0.85[EUR][1000 genomes]
rs2890012	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2890013	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36031690	0.83[EUR][1000 genomes]
rs4309463	0.82[EUR][1000 genomes]
rs4343344	0.82[EUR][1000 genomes]
rs4580256	0.86[EUR][1000 genomes]
rs4968444	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4968447	0.82[EUR][1000 genomes]
rs4968577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968580	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968582	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4968584	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4968585	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4968588	0.82[EUR][1000 genomes]
rs55797010	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55944442	0.94[ASN][1000 genomes]
rs56284136	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57099937	0.86[EUR][1000 genomes]
rs57393813	0.86[EUR][1000 genomes]
rs61599541	0.85[EUR][1000 genomes]
rs62070615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62070616	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62070617	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62070624	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67273191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67938055	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs717961	0.86[EUR][1000 genomes]
rs717962	0.87[EUR][1000 genomes]
rs7207074	0.86[EUR][1000 genomes]
rs7212423	0.82[EUR][1000 genomes]
rs7213470	0.82[EUR][1000 genomes]
rs7213587	0.82[EUR][1000 genomes]
rs7213759	0.85[EUR][1000 genomes]
rs7220688	0.86[EUR][1000 genomes]
rs72841508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8074949	0.80[EUR][1000 genomes]
rs8075370	0.82[EUR][1000 genomes]
rs8182296	0.86[EUR][1000 genomes]
rs9303449	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9807012	0.91[EUR][1000 genomes]
rs9896013	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9897450	0.82[EUR][1000 genomes]
rs9901428	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9903041	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9904294	0.82[EUR][1000 genomes]
rs9905870	0.85[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59704400-59705400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr17:59704600-59705400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr17:59704800-59705400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr17:59704800-59705800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr17:59704800-59705800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr17:59705000-59705400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr17:59705000-59705400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr17:59705000-59705400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr17:59705000-59705600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr17:59705200-59705400	Bivalent Enhancer	NHDF-Ad	bronchial

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