Variant report

Variant	rs67938055
Chromosome Location	chr17:59722449-59722450
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59720411..59725349-chr17:59937191..59942548,5	MCF-7	breast:
2	chr1:107598716..107600253-chr17:59720504..59723254,2	MCF-7	breast:
3	chr17:59493495..59495755-chr17:59720945..59723473,2	MCF-7	breast:
4	chr1:107668947..107670971-chr17:59721901..59724161,2	MCF-7	breast:
5	chr17:59721722..59724178-chr17:59726646..59728632,2	K562	blood:
6	chr17:59722327..59722830-chr17:59891396..59892068,2	MCF-7	breast:
7	chr17:59721922..59723518-chr21:41757556..41760090,2	MCF-7	breast:
8	chr17:59722216..59723916-chr17:60003797..60005415,2	MCF-7	breast:
9	chr17:59487501..59490259-chr17:59721546..59724422,2	MCF-7	breast:
10	chr17:59712266..59715668-chr17:59718639..59723626,4	MCF-7	breast:
11	chr17:59721700..59723242-chr20:55840418..55841930,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136492	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000198890	Chromatin interaction
ENSG00000187013	Chromatin interaction
ENSG00000108506	Chromatin interaction
ENSG00000226308	Chromatin interaction
ENSG00000101144	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10221278	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10438771	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10468558	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10515206	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10515207	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10853038	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10853039	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11079445	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11079446	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11079448	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11650471	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11651510	0.87[EUR][1000 genomes]
rs12449319	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12449902	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12449934	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12450027	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12451862	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12453293	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12453801	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12453966	0.86[EUR][1000 genomes]
rs12603485	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12603617	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12937232	0.82[EUR][1000 genomes]
rs1541346	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16945500	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17532528	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2040608	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2158006	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2188731	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2214184	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2378874	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2378875	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2378884	0.85[EUR][1000 genomes]
rs2890012	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2890013	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36031690	0.83[EUR][1000 genomes]
rs4309463	0.82[EUR][1000 genomes]
rs4343344	0.82[EUR][1000 genomes]
rs4580256	0.86[EUR][1000 genomes]
rs4968444	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4968447	0.82[EUR][1000 genomes]
rs4968577	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4968579	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4968580	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4968582	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4968584	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968585	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968588	0.82[EUR][1000 genomes]
rs55797010	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55944442	0.91[ASN][1000 genomes]
rs56284136	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57099937	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57393813	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61599541	0.85[EUR][1000 genomes]
rs62070615	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62070616	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62070617	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62070624	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67273191	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs717961	0.86[EUR][1000 genomes]
rs717962	0.87[EUR][1000 genomes]
rs7207074	0.86[EUR][1000 genomes]
rs7212423	0.82[EUR][1000 genomes]
rs7213470	0.82[EUR][1000 genomes]
rs7213587	0.82[EUR][1000 genomes]
rs7213759	0.85[EUR][1000 genomes]
rs7220688	0.86[EUR][1000 genomes]
rs72841508	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8074949	0.80[EUR][1000 genomes]
rs8075370	0.82[EUR][1000 genomes]
rs8182296	0.86[EUR][1000 genomes]
rs9303449	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9807012	0.91[EUR][1000 genomes]
rs9896013	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9897450	0.82[EUR][1000 genomes]
rs9901428	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9903041	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9904294	0.82[EUR][1000 genomes]
rs9905870	0.85[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59721400-59722600	Weak transcription	Osteobl	bone
2	chr17:59722400-59724400	Enhancers	NHLF	lung

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