Variant report

Variant	rs4968585
Chromosome Location	chr17:59720839-59720840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59720411..59725349-chr17:59937191..59942548,5	MCF-7	breast:
2	chr17:59718287..59720917-chr17:59914782..59916629,2	MCF-7	breast:
3	chr17:59700010..59701801-chr17:59719540..59721809,2	MCF-7	breast:
4	chr17:59713739..59720977-chr17:59936276..59942105,9	MCF-7	breast:
5	chr1:107598716..107600253-chr17:59720504..59723254,2	MCF-7	breast:
6	chr17:59708015..59710272-chr17:59719199..59721078,2	MCF-7	breast:
7	chr14:68867242..68867896-chr17:59720391..59721113,2	MCF-7	breast:
8	chr17:59718611..59721023-chr17:59912495..59915335,3	MCF-7	breast:
9	chr1:145381878..145384423-chr17:59718987..59721511,2	MCF-7	breast:
10	chr17:59486754..59490043-chr17:59717429..59722148,4	MCF-7	breast:
11	chr17:59712266..59715668-chr17:59718639..59723626,4	MCF-7	breast:
12	chr17:7252410..7254396-chr17:59718335..59721226,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000201558	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000136492	Chromatin interaction
ENSG00000233396	Chromatin interaction
ENSG00000198890	Chromatin interaction
ENSG00000187013	Chromatin interaction
ENSG00000072818	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10221278	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10438771	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10468558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10515206	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10515207	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10853038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10853039	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11079445	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11079446	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11079448	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11650471	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11651510	0.87[EUR][1000 genomes]
rs12449319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12449902	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12449934	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12450027	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12451862	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12453293	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12453801	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12453966	0.86[EUR][1000 genomes]
rs12603485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12603617	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12937232	0.82[EUR][1000 genomes]
rs1541346	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16945500	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17532528	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2040608	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2158006	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2188731	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2214184	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2378874	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2378875	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2378884	0.85[EUR][1000 genomes]
rs2890012	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2890013	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36031690	0.83[EUR][1000 genomes]
rs4309463	0.82[EUR][1000 genomes]
rs4343344	0.82[EUR][1000 genomes]
rs4580256	0.86[EUR][1000 genomes]
rs4968444	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4968447	0.82[EUR][1000 genomes]
rs4968577	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4968579	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4968580	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4968582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4968584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968588	0.82[EUR][1000 genomes]
rs55797010	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55944442	0.91[ASN][1000 genomes]
rs56284136	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57099937	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57393813	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61599541	0.85[EUR][1000 genomes]
rs62070615	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62070616	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62070617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62070624	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67273191	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67938055	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs717961	0.86[EUR][1000 genomes]
rs717962	0.87[EUR][1000 genomes]
rs7207074	0.86[EUR][1000 genomes]
rs7212423	0.82[EUR][1000 genomes]
rs7213470	0.82[EUR][1000 genomes]
rs7213587	0.82[EUR][1000 genomes]
rs7213759	0.85[EUR][1000 genomes]
rs7220688	0.86[EUR][1000 genomes]
rs72841508	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8074949	0.80[EUR][1000 genomes]
rs8075370	0.82[EUR][1000 genomes]
rs8182296	0.86[EUR][1000 genomes]
rs9303449	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9807012	0.91[EUR][1000 genomes]
rs9896013	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9897450	0.82[EUR][1000 genomes]
rs9901428	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9903041	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9904294	0.82[EUR][1000 genomes]
rs9905870	0.85[EUR][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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