Variant report

Variant	rs9901428
Chromosome Location	chr17:59714314-59714315
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59713428..59714949-chr17:59764372..59765883,2	MCF-7	breast:
2	chr17:59711773..59715620-chr17:59912402..59915431,182	MCF-7	breast:
3	chr17:59713739..59720977-chr17:59936276..59942105,9	MCF-7	breast:
4	chr17:59711920..59714434-chr20:52552596..52554314,2	MCF-7	breast:
5	chr17:59712266..59715668-chr17:59718639..59723626,4	MCF-7	breast:
6	chr17:59713258..59714399-chr20:52556148..52557055,7	MCF-7	breast:
7	chr17:59711735..59715118-chr17:59913338..59916270,6	MCF-7	breast:
8	chr17:59713551..59715578-chr20:55850831..55853641,2	MCF-7	breast:
9	chr17:59712273..59714598-chr17:59913945..59916029,103	MCF-7	breast:
10	chr17:59711983..59715077-chr20:55837255..55841825,5	MCF-7	breast:
11	chr17:59713558..59715290-chr17:59804432..59807053,2	MCF-7	breast:
12	chr17:59713223..59715658-chr17:59933248..59936932,3	MCF-7	breast:
13	chr17:59708854..59715538-chr17:59908174..59913185,10	MCF-7	breast:
14	chr17:59711578..59716020-chr17:59910074..59916640,13	MCF-7	breast:
15	chr17:57920899..57922666-chr17:59713380..59716272,2	MCF-7	breast:
16	chr17:59713213..59715758-chr17:60002379..60005087,2	MCF-7	breast:
17	chr17:59712382..59715363-chr20:52555248..52557794,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136492	Chromatin interaction
ENSG00000101144	Chromatin interaction
ENSG00000108506	Chromatin interaction
ENSG00000236352	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10221278	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10438771	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10468558	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10515206	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10515207	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10853038	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10853039	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11079445	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11079446	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11079448	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11650471	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11651510	0.87[EUR][1000 genomes]
rs12449319	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12449902	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12449934	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12450027	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12451862	0.87[EUR][1000 genomes]
rs12453293	0.85[EUR][1000 genomes]
rs12453801	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12453966	0.85[EUR][1000 genomes]
rs12603485	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12603617	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12937232	0.81[EUR][1000 genomes]
rs1541346	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16945500	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17532528	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2040608	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2158006	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2188731	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2214184	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2378874	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2378875	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2378884	0.85[EUR][1000 genomes]
rs2890012	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2890013	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36031690	0.82[EUR][1000 genomes]
rs4309463	0.81[EUR][1000 genomes]
rs4343344	0.81[EUR][1000 genomes]
rs4580256	0.85[EUR][1000 genomes]
rs4968444	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4968447	0.81[EUR][1000 genomes]
rs4968577	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4968579	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4968580	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4968582	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4968584	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4968585	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4968588	0.81[EUR][1000 genomes]
rs55797010	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55944442	0.91[ASN][1000 genomes]
rs56284136	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57099937	0.85[EUR][1000 genomes]
rs57393813	0.85[EUR][1000 genomes]
rs61599541	0.84[EUR][1000 genomes]
rs62070615	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62070616	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62070617	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62070624	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67273191	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67938055	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs717961	0.85[EUR][1000 genomes]
rs717962	0.87[EUR][1000 genomes]
rs7207074	0.85[EUR][1000 genomes]
rs7212423	0.81[EUR][1000 genomes]
rs7213470	0.81[EUR][1000 genomes]
rs7213587	0.81[EUR][1000 genomes]
rs7213759	0.85[EUR][1000 genomes]
rs7220688	0.85[EUR][1000 genomes]
rs72841508	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8075370	0.81[EUR][1000 genomes]
rs8182296	0.85[EUR][1000 genomes]
rs9303449	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9807012	0.90[EUR][1000 genomes]
rs9896013	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9897450	0.81[EUR][1000 genomes]
rs9903041	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9904294	0.81[EUR][1000 genomes]
rs9905870	0.84[EUR][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links