Variant report

Variant	rs36031690
Chromosome Location	chr17:59809248-59809249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59808829..59810720-chr19:11465254..11467573,2	MCF-7	breast:
2	chr17:59809037..59811316-chr17:59855205..59856916,2	K562	blood:
3	chr17:59800558..59801192-chr17:59809224..59809872,3	MCF-7	breast:
4	chr11:65256409..65257938-chr17:59807455..59809286,2	MCF-7	breast:
5	chr17:59807637..59809834-chr17:59859526..59861845,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105520	Chromatin interaction

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs1015771	0.90[EUR][1000 genomes]
rs10221278	0.85[EUR][1000 genomes]
rs10438771	0.83[EUR][1000 genomes]
rs10468558	0.82[EUR][1000 genomes]
rs10515206	0.82[EUR][1000 genomes]
rs10515207	0.81[EUR][1000 genomes]
rs10515211	0.83[EUR][1000 genomes]
rs10853038	0.83[EUR][1000 genomes]
rs10853039	0.84[EUR][1000 genomes]
rs11079445	0.82[EUR][1000 genomes]
rs11079446	0.83[EUR][1000 genomes]
rs11079448	0.83[EUR][1000 genomes]
rs11650471	0.83[EUR][1000 genomes]
rs11651510	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11653175	0.82[EUR][1000 genomes]
rs11658539	0.83[EUR][1000 genomes]
rs11871753	0.90[EUR][1000 genomes]
rs12449319	0.83[EUR][1000 genomes]
rs12450027	0.82[EUR][1000 genomes]
rs12451862	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12453293	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12453801	0.83[EUR][1000 genomes]
rs12453966	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12603485	0.82[EUR][1000 genomes]
rs12603617	0.85[EUR][1000 genomes]
rs12937232	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12948762	0.82[EUR][1000 genomes]
rs12949659	0.83[EUR][1000 genomes]
rs12950438	0.90[EUR][1000 genomes]
rs1468577	0.83[EUR][1000 genomes]
rs1541346	0.82[EUR][1000 genomes]
rs16945500	0.83[EUR][1000 genomes]
rs17532528	0.82[EUR][1000 genomes]
rs1978244	0.83[EUR][1000 genomes]
rs1990337	0.83[EUR][1000 genomes]
rs1990338	0.83[EUR][1000 genomes]
rs2024188	0.90[EUR][1000 genomes]
rs2040608	0.82[EUR][1000 genomes]
rs2109252	0.90[EUR][1000 genomes]
rs2109254	0.90[EUR][1000 genomes]
rs2109255	0.90[EUR][1000 genomes]
rs2158006	0.80[EUR][1000 genomes]
rs2159450	0.90[EUR][1000 genomes]
rs2188731	0.82[EUR][1000 genomes]
rs2191247	0.89[EUR][1000 genomes]
rs2191249	0.90[EUR][1000 genomes]
rs2214184	0.85[EUR][1000 genomes]
rs2378874	0.82[EUR][1000 genomes]
rs2378875	0.82[EUR][1000 genomes]
rs2378884	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2378902	0.90[EUR][1000 genomes]
rs2378905	0.83[EUR][1000 genomes]
rs2378906	0.83[EUR][1000 genomes]
rs28571892	0.90[EUR][1000 genomes]
rs2890012	0.83[EUR][1000 genomes]
rs2890013	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2890021	0.90[EUR][1000 genomes]
rs4309463	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4343344	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4580256	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4968444	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4968447	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4968577	0.82[EUR][1000 genomes]
rs4968579	0.83[EUR][1000 genomes]
rs4968580	0.83[EUR][1000 genomes]
rs4968582	0.83[EUR][1000 genomes]
rs4968584	0.83[EUR][1000 genomes]
rs4968585	0.83[EUR][1000 genomes]
rs4968588	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4988351	0.84[EUR][1000 genomes]
rs55797010	0.83[EUR][1000 genomes]
rs56284136	0.83[EUR][1000 genomes]
rs57099937	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57393813	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61599541	0.87[EUR][1000 genomes]
rs62068837	0.83[EUR][1000 genomes]
rs62070615	0.83[EUR][1000 genomes]
rs62070616	0.83[EUR][1000 genomes]
rs62070617	0.83[EUR][1000 genomes]
rs62070624	0.82[AFR][1000 genomes]
rs6504068	0.90[EUR][1000 genomes]
rs6504070	0.85[EUR][1000 genomes]
rs6504071	0.83[EUR][1000 genomes]
rs6504072	0.83[EUR][1000 genomes]
rs67273191	0.82[EUR][1000 genomes]
rs67938055	0.83[EUR][1000 genomes]
rs717961	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs717962	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7207074	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7207881	0.90[EUR][1000 genomes]
rs7212172	0.83[EUR][1000 genomes]
rs7212423	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7213329	0.83[EUR][1000 genomes]
rs7213470	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7213587	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7213759	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7214884	0.83[EUR][1000 genomes]
rs7215784	0.83[EUR][1000 genomes]
rs7216011	0.83[EUR][1000 genomes]
rs7216756	0.83[EUR][1000 genomes]
rs7216824	0.83[EUR][1000 genomes]
rs7217206	0.83[EUR][1000 genomes]
rs7217292	0.90[EUR][1000 genomes]
rs7220688	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7220719	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7222799	0.82[EUR][1000 genomes]
rs72841508	0.83[EUR][1000 genomes]
rs8074949	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8075370	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8075397	0.91[EUR][1000 genomes]
rs8077088	0.83[EUR][1000 genomes]
rs8078977	0.87[EUR][1000 genomes]
rs8182296	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9303449	0.83[EUR][1000 genomes]
rs9807012	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9895987	0.83[EUR][1000 genomes]
rs9896013	0.82[EUR][1000 genomes]
rs9897121	0.83[EUR][1000 genomes]
rs9897450	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9897928	0.90[EUR][1000 genomes]
rs9900559	0.83[EUR][1000 genomes]
rs9901428	0.82[EUR][1000 genomes]
rs9902995	0.90[EUR][1000 genomes]
rs9903041	0.82[EUR][1000 genomes]
rs9904292	0.83[EUR][1000 genomes]
rs9904294	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9905870	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9906313	0.90[EUR][1000 genomes]
rs9907299	0.83[EUR][1000 genomes]
rs991378	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv908673	chr17:59767501-59926645	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases
3	nsv908674	chr17:59800827-59899790	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
4	esv3335472	chr17:59803168-59821322	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59766000-59819000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr17:59781600-59835400	Weak transcription	Hela-S3	cervix
3	chr17:59784400-59815200	Weak transcription	HMEC	breast
4	chr17:59786600-59815400	Weak transcription	Fetal Thymus	thymus
5	chr17:59792000-59815200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr17:59793200-59819400	Weak transcription	NH-A	brain
7	chr17:59793600-59821200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr17:59794200-59815200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr17:59794200-59819600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr17:59794400-59815200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr17:59794400-59816200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr17:59794400-59848200	Weak transcription	HUVEC	blood vessel
13	chr17:59794800-59815200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr17:59796200-59814400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr17:59797400-59817600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr17:59797600-59813000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr17:59798400-59815000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr17:59798800-59816400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr17:59800800-59814400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr17:59801000-59815400	Weak transcription	HepG2	liver
21	chr17:59801200-59817400	Weak transcription	Small Intestine	intestine
22	chr17:59801600-59815000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr17:59801600-59816200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr17:59804200-59814400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr17:59804200-59818800	Weak transcription	Brain Germinal Matrix	brain
26	chr17:59804200-59847400	Weak transcription	K562	blood
27	chr17:59804600-59834200	Weak transcription	Osteobl	bone
28	chr17:59805800-59815200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr17:59805800-59818800	Weak transcription	Fetal Muscle Leg	muscle
30	chr17:59806200-59815200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr17:59806200-59825600	Weak transcription	Thymus	Thymus
32	chr17:59806400-59814200	Weak transcription	A549	lung
33	chr17:59806800-59819800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr17:59807400-59814600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr17:59807600-59813000	Weak transcription	Dnd41	blood
36	chr17:59807600-59813200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr17:59807600-59813800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr17:59807600-59815200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr17:59807600-59838400	Weak transcription	Fetal Stomach	stomach
40	chr17:59808000-59809800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr17:59808000-59814400	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr17:59809200-59815200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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