Variant report

Variant	rs10221278
Chromosome Location	chr17:59739005-59739006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59737480..59739924-chr17:59791179..59793647,2	MCF-7	breast:
2	chr11:77850171..77852366-chr17:59737478..59739727,2	MCF-7	breast:
3	chr17:59736385..59739988-chr17:59806078..59809150,3	MCF-7	breast:
4	chr17:59738713..59740616-chr17:59781704..59784682,2	MCF-7	breast:
5	chr17:59487006..59489833-chr17:59735650..59739438,3	MCF-7	breast:
6	chr17:59737089..59739908-chr8:116584424..116586257,2	MCF-7	breast:
7	chr17:59738736..59741211-chr17:59912822..59914383,2	MCF-7	breast:
8	chr17:59738960..59741122-chr17:59903243..59905163,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000246174	Chromatin interaction
ENSG00000187013	Chromatin interaction
ENSG00000159063	Chromatin interaction
ENSG00000267280	Chromatin interaction

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs1015771	0.95[CEU][hapmap];0.83[TSI][hapmap]
rs10438771	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10468558	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10515206	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10515207	0.94[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10515211	0.90[CEU][hapmap];0.83[TSI][hapmap]
rs10853038	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10853039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079445	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11079446	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11079448	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11650471	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11651510	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11871753	0.90[CEU][hapmap];0.83[TSI][hapmap]
rs12449319	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12449902	0.80[EUR][1000 genomes]
rs12449934	0.80[EUR][1000 genomes]
rs12450027	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12451862	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12453293	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12453801	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12453966	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12603485	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12603617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12937232	0.84[EUR][1000 genomes]
rs12949659	0.90[CEU][hapmap];0.83[TSI][hapmap]
rs1468577	0.90[CEU][hapmap];0.83[TSI][hapmap]
rs1541346	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16945500	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17532528	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1978244	0.90[CEU][hapmap];0.83[TSI][hapmap]
rs1990338	0.90[CEU][hapmap];0.83[TSI][hapmap]
rs2040608	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2158006	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2188731	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2191249	0.95[CEU][hapmap];0.81[CHB][hapmap];0.83[TSI][hapmap]
rs2214184	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2378874	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2378875	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2378884	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2378905	0.90[CEU][hapmap]
rs2890012	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2890013	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2890021	0.95[CEU][hapmap];0.81[CHB][hapmap]
rs36031690	0.85[EUR][1000 genomes]
rs4309463	0.84[EUR][1000 genomes]
rs4343344	0.84[EUR][1000 genomes]
rs4580256	0.88[EUR][1000 genomes]
rs4968444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968447	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4968577	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4968579	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4968580	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4968582	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4968584	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4968585	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4968588	0.84[EUR][1000 genomes]
rs55797010	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55944442	0.86[ASN][1000 genomes]
rs56284136	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57099937	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57393813	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61599541	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62070615	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62070616	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62070617	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62070624	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6504066	1.00[CEU][hapmap];0.88[CHB][hapmap];0.96[TSI][hapmap]
rs6504068	0.94[CEU][hapmap];0.80[CHB][hapmap]
rs6504071	0.94[CEU][hapmap]
rs6504072	0.90[CEU][hapmap]
rs67273191	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67938055	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs717961	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes]
rs717962	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[EUR][1000 genomes]
rs7207074	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes]
rs7207881	0.95[CEU][hapmap]
rs7208704	0.94[CEU][hapmap]
rs7212172	0.90[CEU][hapmap];0.83[TSI][hapmap]
rs7212423	1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes]
rs7213329	0.90[CEU][hapmap];0.83[TSI][hapmap]
rs7213470	0.84[EUR][1000 genomes]
rs7213587	1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes]
rs7213759	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7214884	0.87[CEU][hapmap]
rs7215784	0.90[CEU][hapmap];0.83[TSI][hapmap]
rs7216756	0.90[CEU][hapmap];0.83[TSI][hapmap]
rs7217206	0.94[CEU][hapmap]
rs7220688	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[CHD][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes]
rs7220719	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs7222799	0.90[CEU][hapmap];0.83[TSI][hapmap]
rs72841508	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8074949	0.82[EUR][1000 genomes]
rs8075370	1.00[CEU][hapmap];0.94[CHB][hapmap];0.96[TSI][hapmap];0.84[EUR][1000 genomes]
rs8078977	0.84[CEU][hapmap]
rs8182296	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9303449	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9807012	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9895987	0.90[CEU][hapmap];0.83[TSI][hapmap]
rs9896013	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9897121	0.90[CEU][hapmap];0.83[TSI][hapmap]
rs9897450	0.84[EUR][1000 genomes]
rs9897928	0.95[CEU][hapmap]
rs9901428	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9902995	0.95[CEU][hapmap];0.81[CHB][hapmap];0.83[TSI][hapmap]
rs9903041	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9904292	0.90[CEU][hapmap];0.83[TSI][hapmap]
rs9904294	0.84[EUR][1000 genomes]
rs9905870	0.87[EUR][1000 genomes]
rs9906313	0.95[CEU][hapmap];0.83[TSI][hapmap]
rs9907299	0.89[CEU][hapmap]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59728400-59740000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr17:59735000-59739800	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links