Variant report
| Variant | rs55944442 |
|---|---|
| Chromosome Location | chr17:59710300-59710301 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr17:59700754..59703552-chr17:59708275..59711743,3 | MCF-7 | breast: | |
| 2 | chr17:59710076..59712793-chr8:102503080..102504894,2 | MCF-7 | breast: | |
| 3 | chr17:59709573..59711229-chr3:122274606..122276887,2 | MCF-7 | breast: | |
| 4 | chr17:59708854..59715538-chr17:59908174..59913185,10 | MCF-7 | breast: | |
| 5 | chr17:59679546..59682587-chr17:59710273..59713541,3 | MCF-7 | breast: | |
| 6 | chr17:59710076..59712294-chr20:52701398..52703517,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254024 | Chromatin interaction |
| ENSG00000083307 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:49)
| rs_ID | r2[population] |
|---|---|
| rs10221278 | 0.86[ASN][1000 genomes] |
| rs10438771 | 0.91[ASN][1000 genomes] |
| rs10468558 | 0.91[ASN][1000 genomes] |
| rs10515206 | 0.93[ASN][1000 genomes] |
| rs10515207 | 0.94[ASN][1000 genomes] |
| rs10853038 | 0.91[ASN][1000 genomes] |
| rs10853039 | 0.86[ASN][1000 genomes] |
| rs11079445 | 0.94[ASN][1000 genomes] |
| rs11079446 | 0.94[ASN][1000 genomes] |
| rs11079448 | 0.92[ASN][1000 genomes] |
| rs11650471 | 0.94[ASN][1000 genomes] |
| rs12449319 | 0.92[ASN][1000 genomes] |
| rs12449902 | 0.84[ASN][1000 genomes] |
| rs12449934 | 0.83[ASN][1000 genomes] |
| rs12450027 | 0.94[ASN][1000 genomes] |
| rs12453801 | 0.94[ASN][1000 genomes] |
| rs12603485 | 0.95[ASN][1000 genomes] |
| rs12603617 | 0.86[ASN][1000 genomes] |
| rs1541346 | 0.94[ASN][1000 genomes] |
| rs16945500 | 0.91[ASN][1000 genomes] |
| rs17532528 | 0.91[ASN][1000 genomes] |
| rs2040608 | 0.92[ASN][1000 genomes] |
| rs2158006 | 0.94[ASN][1000 genomes] |
| rs2188731 | 0.94[ASN][1000 genomes] |
| rs2214184 | 0.88[ASN][1000 genomes] |
| rs2378874 | 0.94[ASN][1000 genomes] |
| rs2378875 | 0.94[ASN][1000 genomes] |
| rs2890012 | 0.91[ASN][1000 genomes] |
| rs2890013 | 0.89[ASN][1000 genomes] |
| rs4968444 | 0.86[ASN][1000 genomes] |
| rs4968577 | 0.94[ASN][1000 genomes] |
| rs4968579 | 0.94[ASN][1000 genomes] |
| rs4968580 | 0.94[ASN][1000 genomes] |
| rs4968582 | 0.91[ASN][1000 genomes] |
| rs4968584 | 0.91[ASN][1000 genomes] |
| rs4968585 | 0.91[ASN][1000 genomes] |
| rs55797010 | 0.91[ASN][1000 genomes] |
| rs56284136 | 0.91[ASN][1000 genomes] |
| rs62070615 | 0.94[ASN][1000 genomes] |
| rs62070616 | 0.92[ASN][1000 genomes] |
| rs62070617 | 0.92[ASN][1000 genomes] |
| rs62070624 | 0.82[ASN][1000 genomes] |
| rs67273191 | 0.94[ASN][1000 genomes] |
| rs67938055 | 0.91[ASN][1000 genomes] |
| rs72841508 | 0.94[ASN][1000 genomes] |
| rs9303449 | 0.91[ASN][1000 genomes] |
| rs9896013 | 0.94[ASN][1000 genomes] |
| rs9901428 | 0.91[ASN][1000 genomes] |
| rs9903041 | 0.91[ASN][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
