Variant report

Variant	rs10515207
Chromosome Location	chr17:59693918-59693919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59693752..59696343-chr17:59703736..59707002,4	MCF-7	breast:
2	chr17:59692941..59695723-chr17:59718310..59720585,2	K562	blood:
3	chr17:59692234..59694014-chr3:64007671..64009173,2	MCF-7	breast:
4	chr17:59688409..59694117-chr20:55840228..55843063,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226308	Chromatin interaction
ENSG00000163636	Chromatin interaction
ENSG00000101144	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs1015771	0.94[CEU][hapmap]
rs10221278	0.94[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10438771	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10468558	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10515206	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10515211	0.83[CEU][hapmap]
rs10853038	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10853039	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11079445	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079446	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11079448	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11650471	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11651510	0.85[EUR][1000 genomes]
rs11871753	0.84[CEU][hapmap]
rs12449319	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12449902	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12449934	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12450027	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12451862	0.94[CEU][hapmap];0.88[CHB][hapmap];0.85[EUR][1000 genomes]
rs12453293	0.84[EUR][1000 genomes]
rs12453801	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12453966	0.94[CEU][hapmap];0.88[CHB][hapmap];0.84[EUR][1000 genomes]
rs12603485	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12603617	0.94[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12949659	0.83[CEU][hapmap]
rs1468577	0.83[CEU][hapmap]
rs1541346	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16945500	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17532528	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17610705	0.83[YRI][hapmap]
rs1978244	0.83[CEU][hapmap]
rs1990338	0.83[CEU][hapmap]
rs2040608	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2158006	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2188731	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2191249	0.89[CEU][hapmap]
rs2214184	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2378874	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2378875	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2378884	0.83[EUR][1000 genomes]
rs2378905	0.84[CEU][hapmap]
rs2890012	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2890013	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2890021	0.90[CEU][hapmap]
rs36031690	0.81[EUR][1000 genomes]
rs4580256	0.84[EUR][1000 genomes]
rs4968444	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4968447	0.94[CEU][hapmap];0.88[CHB][hapmap]
rs4968577	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968579	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968580	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4968582	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4968584	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4968585	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55797010	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55944442	0.94[ASN][1000 genomes]
rs56284136	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57099937	0.84[EUR][1000 genomes]
rs57393813	0.84[EUR][1000 genomes]
rs61599541	0.83[EUR][1000 genomes]
rs62070615	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62070616	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62070617	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62070624	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6504066	0.94[CEU][hapmap];0.82[CHB][hapmap]
rs6504068	0.89[CEU][hapmap]
rs6504071	0.89[CEU][hapmap]
rs6504072	0.84[CEU][hapmap]
rs67273191	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67938055	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs717961	0.94[CEU][hapmap];0.88[CHB][hapmap];0.84[EUR][1000 genomes]
rs717962	0.94[CEU][hapmap];0.88[CHB][hapmap];0.85[EUR][1000 genomes]
rs7207074	0.94[CEU][hapmap];0.88[CHB][hapmap];0.84[EUR][1000 genomes]
rs7207881	0.90[CEU][hapmap]
rs7208704	0.89[CEU][hapmap]
rs7212172	0.83[CEU][hapmap]
rs7212423	0.94[CEU][hapmap];0.88[CHB][hapmap]
rs7213329	0.83[CEU][hapmap]
rs7213587	0.94[CEU][hapmap];0.88[CHB][hapmap]
rs7213759	0.83[EUR][1000 genomes]
rs7214884	0.87[CEU][hapmap]
rs7216756	0.83[CEU][hapmap]
rs7217206	0.86[CEU][hapmap]
rs7220688	0.94[CEU][hapmap];0.88[CHB][hapmap];0.84[EUR][1000 genomes]
rs7220719	0.94[CEU][hapmap];0.88[CHB][hapmap]
rs7222799	0.83[CEU][hapmap]
rs72841508	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8075370	0.94[CEU][hapmap];0.88[CHB][hapmap]
rs8182296	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs9303449	0.94[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9807012	0.89[EUR][1000 genomes]
rs9895987	0.83[CEU][hapmap]
rs9896013	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9897121	0.83[CEU][hapmap]
rs9897928	0.89[CEU][hapmap]
rs9901428	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9902995	0.89[CEU][hapmap]
rs9903041	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9904292	0.83[CEU][hapmap]
rs9905870	0.82[EUR][1000 genomes]
rs9906313	0.89[CEU][hapmap]
rs9907299	0.82[CEU][hapmap]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59693000-59694000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr17:59693200-59694000	Flanking Active TSS	GM12878-XiMat	blood
3	chr17:59693200-59694000	Enhancers	HSMMtube	muscle
4	chr17:59693200-59694400	Enhancers	Adipose Nuclei	Adipose
5	chr17:59693400-59695200	Enhancers	Fetal Lung	lung
6	chr17:59693600-59694000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr17:59693600-59694200	Active TSS	NHLF	lung
8	chr17:59693600-59701200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr17:59693800-59694000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr17:59693800-59694000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr17:59693800-59694000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr17:59693800-59694000	Active TSS	Muscle Satellite Cultured Cells	--
13	chr17:59693800-59694000	Active TSS	Duodenum Mucosa	Duodenum
14	chr17:59693800-59694000	Active TSS	Osteobl	bone

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