Variant report

Variant	rs12449934
Chromosome Location	chr17:59692891-59692892
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:59692156..59693682-chr17:59783711..59786408,2	MCF-7	breast:
2	chr17:59692234..59694014-chr3:64007671..64009173,2	MCF-7	breast:
3	chr17:59688409..59694117-chr20:55840228..55843063,4	MCF-7	breast:
4	chr17:59690417..59693153-chr20:46178487..46181271,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226308	Chromatin interaction
ENSG00000101144	Chromatin interaction
ENSG00000163636	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10221278	0.80[EUR][1000 genomes]
rs10438771	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10468558	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10515206	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10515207	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10853038	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11079445	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11079446	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11079448	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11650471	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12449319	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12449902	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12450027	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12453801	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12603485	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12603617	0.80[EUR][1000 genomes]
rs1541346	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16945500	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17532528	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2040608	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2158006	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2188731	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2214184	0.80[EUR][1000 genomes]
rs2378874	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2378875	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2890012	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2890013	0.80[EUR][1000 genomes]
rs4968577	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4968579	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4968580	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4968582	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4968584	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4968585	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55797010	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55944442	0.83[ASN][1000 genomes]
rs56284136	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62070615	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62070616	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62070617	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62070624	0.82[EUR][1000 genomes]
rs67273191	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67938055	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72841508	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9303449	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9896013	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9901428	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9903041	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59688600-59693400	Weak transcription	Fetal Lung	lung
2	chr17:59692200-59693200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr17:59692400-59693600	Enhancers	Osteobl	bone
4	chr17:59692600-59693200	Active TSS	GM12878-XiMat	blood
5	chr17:59692600-59693400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr17:59692600-59693400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr17:59692600-59693600	Enhancers	NHDF-Ad	bronchial

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