Variant report
| Variant | rs55640923 |
|---|---|
| Chromosome Location | chr3:46221974-46221975 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:46221407..46223602-chr3:46228126..46230272,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs41366447 | 1.00[AMR][1000 genomes] |
| rs55751414 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55931101 | 1.00[AMR][1000 genomes] |
| rs56109512 | 1.00[AMR][1000 genomes] |
| rs58433765 | 1.00[AMR][1000 genomes] |
| rs58770254 | 1.00[AMR][1000 genomes] |
| rs58794528 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59159352 | 1.00[AMR][1000 genomes] |
| rs59998763 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61610167 | 1.00[AMR][1000 genomes] |
| rs6767478 | 1.00[AMR][1000 genomes] |
| rs73830718 | 1.00[AMR][1000 genomes] |
| rs73830721 | 1.00[AMR][1000 genomes] |
| rs73830723 | 1.00[AMR][1000 genomes] |
| rs73830727 | 1.00[AMR][1000 genomes] |
| rs73830729 | 1.00[AMR][1000 genomes] |
| rs73830731 | 1.00[AMR][1000 genomes] |
| rs73830753 | 1.00[AMR][1000 genomes] |
| rs73830760 | 1.00[AMR][1000 genomes] |
| rs73830761 | 1.00[AMR][1000 genomes] |
| rs73830766 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73830778 | 1.00[AMR][1000 genomes] |
| rs73830799 | 1.00[AMR][1000 genomes] |
| rs73830801 | 1.00[AMR][1000 genomes] |
| rs73830802 | 1.00[AMR][1000 genomes] |
| rs73833003 | 1.00[AMR][1000 genomes] |
| rs73833004 | 1.00[AMR][1000 genomes] |
| rs73833024 | 1.00[AMR][1000 genomes] |
| rs73833037 | 1.00[AMR][1000 genomes] |
| rs7626037 | 1.00[AMR][1000 genomes] |
| rs7643001 | 1.00[AMR][1000 genomes] |
| rs9834935 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv876734 | chr3:45725031-46468467 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 42 gene(s) | inside rSNPs | diseases |
| 2 | nsv498008 | chr3:45733423-46319401 | Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:46212200-46224800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
