Variant report

Variant	rs73833004
Chromosome Location	chr3:46255879-46255880
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:46247078..46249229-chr3:46254602..46257153,3	MCF-7	breast:
2	chr3:46255851..46256423-chr3:46414105..46414780,2	MCF-7	breast:
3	chr3:46254841..46257750-chr3:46263557..46266874,3	K562	blood:
4	chr3:46254841..46257750-chr3:46264550..46266874,2	K562	blood:

Variant related genes	Relation type
ENSG00000160791	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs41366447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55640923	1.00[AMR][1000 genomes]
rs55751414	1.00[AMR][1000 genomes]
rs55931101	1.00[AMR][1000 genomes]
rs56109512	1.00[AMR][1000 genomes]
rs58433765	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58770254	1.00[AMR][1000 genomes]
rs58794528	1.00[AMR][1000 genomes]
rs59159352	1.00[AMR][1000 genomes]
rs59998763	1.00[AMR][1000 genomes]
rs61610167	1.00[AMR][1000 genomes]
rs6767478	1.00[AMR][1000 genomes]
rs73830718	1.00[AMR][1000 genomes]
rs73830721	1.00[AMR][1000 genomes]
rs73830723	1.00[AMR][1000 genomes]
rs73830727	1.00[AMR][1000 genomes]
rs73830729	1.00[AMR][1000 genomes]
rs73830731	1.00[AMR][1000 genomes]
rs73830753	1.00[AMR][1000 genomes]
rs73830760	1.00[AMR][1000 genomes]
rs73830761	1.00[AMR][1000 genomes]
rs73830766	1.00[AMR][1000 genomes]
rs73830778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830799	1.00[AMR][1000 genomes]
rs73830801	1.00[AMR][1000 genomes]
rs73830802	1.00[AMR][1000 genomes]
rs73833003	1.00[AMR][1000 genomes]
rs73833024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833037	1.00[AMR][1000 genomes]
rs7626037	1.00[AMR][1000 genomes]
rs7643001	1.00[AMR][1000 genomes]
rs9834935	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46248200-46256400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:46248400-46256400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:46252400-46256400	Weak transcription	Lung	lung
4	chr3:46253000-46256800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:46253800-46256600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr3:46253800-46256800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:46254000-46256400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr3:46254000-46256600	Enhancers	Primary T cells fromperipheralblood	blood
9	chr3:46254000-46256600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:46254400-46256400	Enhancers	Primary hematopoietic stem cells	blood
11	chr3:46254400-46256600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:46255200-46256200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr3:46255200-46256400	Enhancers	Thymus	Thymus
14	chr3:46255200-46256600	Enhancers	GM12878-XiMat	blood
15	chr3:46255200-46257200	Enhancers	Fetal Thymus	thymus
16	chr3:46255400-46256000	Enhancers	Primary T cells from cord blood	blood
17	chr3:46255400-46256400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:46255400-46256400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr3:46255400-46256400	Weak transcription	Spleen	Spleen
20	chr3:46255400-46256600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:46255400-46256600	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr3:46255400-46256800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:46255400-46262200	Weak transcription	Primary B cells from peripheral blood	blood
24	chr3:46255600-46256200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr3:46255600-46256800	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr3:46255600-46256800	Enhancers	Dnd41	blood
27	chr3:46255600-46256800	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr3:46255800-46256000	Enhancers	Duodenum Mucosa	Duodenum

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