Variant report

Variant	rs73830801
Chromosome Location	chr3:46253182-46253183
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs41366447	1.00[AMR][1000 genomes]
rs55640923	1.00[AMR][1000 genomes]
rs55751414	1.00[AMR][1000 genomes]
rs55931101	1.00[AMR][1000 genomes]
rs56109512	1.00[AMR][1000 genomes]
rs58433765	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58770254	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58794528	1.00[AMR][1000 genomes]
rs59159352	1.00[AMR][1000 genomes]
rs59998763	1.00[AMR][1000 genomes]
rs61610167	1.00[AMR][1000 genomes]
rs6767478	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830718	1.00[AMR][1000 genomes]
rs73830721	1.00[AMR][1000 genomes]
rs73830723	1.00[AMR][1000 genomes]
rs73830727	1.00[AMR][1000 genomes]
rs73830729	1.00[AMR][1000 genomes]
rs73830731	1.00[AMR][1000 genomes]
rs73830753	1.00[AMR][1000 genomes]
rs73830760	1.00[AMR][1000 genomes]
rs73830761	1.00[AMR][1000 genomes]
rs73830766	1.00[AMR][1000 genomes]
rs73830778	1.00[AMR][1000 genomes]
rs73830799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73833004	1.00[AMR][1000 genomes]
rs73833024	1.00[AMR][1000 genomes]
rs73833037	1.00[AMR][1000 genomes]
rs7626037	1.00[AMR][1000 genomes]
rs7643001	1.00[AMR][1000 genomes]
rs9834935	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46248200-46256400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:46248400-46256400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:46249800-46255800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:46250000-46254600	Enhancers	Fetal Thymus	thymus
5	chr3:46250200-46254000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:46250200-46254000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr3:46250200-46254000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr3:46250200-46254200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr3:46250200-46254200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr3:46250200-46254200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr3:46250200-46254200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr3:46250200-46254600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr3:46250400-46253200	Weak transcription	Thymus	Thymus
14	chr3:46250400-46254000	Weak transcription	Dnd41	blood
15	chr3:46250400-46254200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:46250400-46254200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr3:46250600-46254000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr3:46250800-46253800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr3:46251000-46254000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr3:46251200-46254200	Weak transcription	Primary T cells from cord blood	blood
21	chr3:46251400-46255200	Weak transcription	Colonic Mucosa	Colon
22	chr3:46251600-46254400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr3:46251600-46254600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr3:46251800-46254400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:46251800-46254600	Weak transcription	Primary B cells from peripheral blood	blood
26	chr3:46252000-46254000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:46252000-46254200	Weak transcription	Primary B cells from cord blood	blood
28	chr3:46252000-46255200	Weak transcription	Spleen	Spleen
29	chr3:46252200-46253600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr3:46252200-46253800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr3:46252200-46254000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr3:46252200-46254800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:46252400-46256400	Weak transcription	Lung	lung
34	chr3:46253000-46253600	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr3:46253000-46254800	Enhancers	GM12878-XiMat	blood
36	chr3:46253000-46256800	Enhancers	Primary monocytes fromperipheralblood	blood

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