Variant report

Variant	rs73833037
Chromosome Location	chr3:46282814-46282815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EBF1	chr3:46282805-46283013	GM12878	blood:	n/a	chr3:46282899-46282910
2	EBF1	chr3:46282758-46283016	GM12878	blood:	n/a	chr3:46282899-46282910

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:46282766-46282816	HRE	kidney:	n/a
2	chr3:46282766-46282816	NB4	blood:	n/a
3	chr3:46282766-46282816	GM12892	blood:	n/a
4	chr3:46282766-46282816	H1-hESC	embryonic stem cell:	embryo
5	chr3:46282766-46282816	CMK	blood:	n/a
6	chr3:46282766-46282816	SK-N-SH_RA	brain:	n/a
7	chr3:46282766-46282816	HepG2	liver:	n/a
8	chr3:46282766-46282816	HMEC	breast:	n/a
9	chr3:46282766-46282816	HUVEC	blood vessel:	n/a
10	chr3:46282766-46282816	SK-N-SH	brain:	n/a
11	chr3:46282766-46282816	AG04449	skin:	fetal
12	chr3:46282766-46282816	BJ	skin:	n/a
13	chr3:46282766-46282816	NT2-D1	testis:	n/a
14	chr3:46282766-46282816	Hepatocyte	liver:	n/a
15	chr3:46282766-46282816	HEK293	kidney:	embryo
16	chr3:46282766-46282816	HIPEpiC	eye:	n/a
17	chr3:46282766-46282816	HCF	heart:	n/a
18	chr3:46282766-46282816	GM12891	blood:	n/a
19	chr3:46282766-46282816	HAEpiC	amniotic membrane:	n/a
20	chr3:46282766-46282816	NHDF-neo	bronchial:	n/a
21	chr3:46282766-46282816	AG04450	lung:	fetal
22	chr3:46282766-46282816	Hela-S3	cervix:	n/a
23	chr3:46282766-46282816	AG09319	gingival:	n/a
24	chr3:46282766-46282816	SAEC	small airway:	n/a
25	chr3:46282766-46282816	SK-N-MC	brain:	n/a
26	chr3:46282766-46282816	MCF-7	breast:	n/a
27	chr3:46282766-46282816	K562	blood:	n/a
28	chr3:46282766-46282816	AG09309	skin:	n/a
29	chr3:46282766-46282816	RPTEC	kidney:	n/a
30	chr3:46282766-46282816	T-47D	breast:	n/a
31	chr3:46282766-46282816	HCT-116	colon:	n/a
32	chr3:46282766-46282816	HCM	heart:	n/a
33	chr3:46282766-46282816	LNCaP	prostate:	n/a
34	chr3:46282766-46282816	NHBE	bronchial:	n/a
35	chr3:46282766-46282816	AG10803	skin:	n/a
36	chr3:46282766-46282816	SKMC	muscle:	n/a
37	chr3:46282766-46282816	A549	lung:	n/a
38	chr3:46282766-46282816	BE2_C	brain:	n/a
39	chr3:46282766-46282816	IMR90	lung:	fetal
40	chr3:46282766-46282816	GM19239	blood:	n/a
41	chr3:46282766-46282816	HCPEpiC	choroid plexus:	n/a
42	chr3:46282766-46282816	HRCEpiC	kidney:	n/a
43	chr3:46282766-46282816	Caco-2	colon:	n/a
44	chr3:46282766-46282816	ECC-1	luminal epithelium:	n/a
45	chr3:46282766-46282816	GM12878	blood:	n/a
46	chr3:46282766-46282816	GM06990	blood:	n/a
47	chr3:46282766-46282816	AoSMC	blood vessel:	n/a
48	chr3:46282766-46282816	HEEpiC	esophagus:	n/a
49	chr3:46282766-46282816	PFSK-1	brain:	n/a
50	chr3:46282766-46282816	HL-60	blood:	n/a

No data

Variant related genes	Relation type
CCR3	TF binding region
CCR3	CpG island

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs41366447	1.00[AMR][1000 genomes]
rs55640923	1.00[AMR][1000 genomes]
rs55751414	1.00[AMR][1000 genomes]
rs55931101	1.00[AMR][1000 genomes]
rs56109512	1.00[AMR][1000 genomes]
rs58433765	1.00[AMR][1000 genomes]
rs58770254	1.00[AMR][1000 genomes]
rs58794528	1.00[AMR][1000 genomes]
rs59159352	1.00[AMR][1000 genomes]
rs59998763	1.00[AMR][1000 genomes]
rs61610167	1.00[AMR][1000 genomes]
rs6767478	1.00[AMR][1000 genomes]
rs73830718	1.00[AMR][1000 genomes]
rs73830721	1.00[AMR][1000 genomes]
rs73830723	1.00[AMR][1000 genomes]
rs73830727	1.00[AMR][1000 genomes]
rs73830729	1.00[AMR][1000 genomes]
rs73830731	1.00[AMR][1000 genomes]
rs73830753	1.00[AMR][1000 genomes]
rs73830760	1.00[AMR][1000 genomes]
rs73830761	1.00[AMR][1000 genomes]
rs73830766	1.00[AMR][1000 genomes]
rs73830778	1.00[AMR][1000 genomes]
rs73830799	1.00[AMR][1000 genomes]
rs73830801	1.00[AMR][1000 genomes]
rs73830802	1.00[AMR][1000 genomes]
rs73833003	1.00[AMR][1000 genomes]
rs73833004	1.00[AMR][1000 genomes]
rs73833024	1.00[AMR][1000 genomes]
rs7626037	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7643001	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46278400-46283600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:46278600-46283400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:46278600-46283400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:46281600-46285600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:46281600-46288600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr3:46281800-46284400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:46282000-46283600	Weak transcription	Fetal Thymus	thymus
8	chr3:46282200-46283000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:46282200-46283800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr3:46282600-46283200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:46282600-46283800	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr3:46282800-46283600	Weak transcription	Primary T cells from cord blood	blood
13	chr3:46282800-46284400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr3:46282800-46284400	Enhancers	Primary B cells from peripheral blood	blood

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