Variant report

Variant	rs55751414
Chromosome Location	chr3:46183297-46183298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs41366447	1.00[AMR][1000 genomes]
rs55640923	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55931101	1.00[AMR][1000 genomes]
rs56109512	1.00[AMR][1000 genomes]
rs58433765	1.00[AMR][1000 genomes]
rs58770254	1.00[AMR][1000 genomes]
rs58794528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59159352	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59998763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61610167	1.00[AMR][1000 genomes]
rs6767478	1.00[AMR][1000 genomes]
rs73830718	1.00[AMR][1000 genomes]
rs73830721	1.00[AMR][1000 genomes]
rs73830723	1.00[AMR][1000 genomes]
rs73830727	1.00[AMR][1000 genomes]
rs73830729	1.00[AMR][1000 genomes]
rs73830731	1.00[AMR][1000 genomes]
rs73830753	1.00[AMR][1000 genomes]
rs73830760	1.00[AMR][1000 genomes]
rs73830761	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830778	1.00[AMR][1000 genomes]
rs73830799	1.00[AMR][1000 genomes]
rs73830801	1.00[AMR][1000 genomes]
rs73830802	1.00[AMR][1000 genomes]
rs73833003	1.00[AMR][1000 genomes]
rs73833004	1.00[AMR][1000 genomes]
rs73833024	1.00[AMR][1000 genomes]
rs73833037	1.00[AMR][1000 genomes]
rs7626037	1.00[AMR][1000 genomes]
rs7643001	1.00[AMR][1000 genomes]
rs9834935	1.00[AMR][1000 genomes]
rs9865446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46173800-46184400	Weak transcription	Spleen	Spleen
2	chr3:46174000-46202800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr3:46174200-46183400	Weak transcription	Primary B cells from cord blood	blood
4	chr3:46182400-46184200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr3:46183000-46184600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr3:46183000-46187200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr3:46183200-46183600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:46183200-46184600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links