Variant report

Variant	rs73830761
Chromosome Location	chr3:46185468-46185469
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs41366447	1.00[AMR][1000 genomes]
rs55640923	1.00[AMR][1000 genomes]
rs55751414	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55931101	1.00[AMR][1000 genomes]
rs56109512	1.00[AMR][1000 genomes]
rs58433765	1.00[AMR][1000 genomes]
rs58770254	1.00[AMR][1000 genomes]
rs58794528	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59159352	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59998763	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61610167	1.00[AMR][1000 genomes]
rs6767478	1.00[AMR][1000 genomes]
rs73830718	1.00[AMR][1000 genomes]
rs73830721	1.00[AMR][1000 genomes]
rs73830723	1.00[AMR][1000 genomes]
rs73830727	1.00[AMR][1000 genomes]
rs73830729	1.00[AMR][1000 genomes]
rs73830731	1.00[AMR][1000 genomes]
rs73830753	1.00[AMR][1000 genomes]
rs73830760	1.00[AMR][1000 genomes]
rs73830766	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830778	1.00[AMR][1000 genomes]
rs73830799	1.00[AMR][1000 genomes]
rs73830801	1.00[AMR][1000 genomes]
rs73830802	1.00[AMR][1000 genomes]
rs73833003	1.00[AMR][1000 genomes]
rs73833004	1.00[AMR][1000 genomes]
rs73833024	1.00[AMR][1000 genomes]
rs73833037	1.00[AMR][1000 genomes]
rs7626037	1.00[AMR][1000 genomes]
rs7643001	1.00[AMR][1000 genomes]
rs9834935	1.00[AMR][1000 genomes]
rs9865446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46174000-46202800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:46183000-46187200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:46184000-46186000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:46184000-46186000	Enhancers	Placenta	Placenta
5	chr3:46184400-46186000	Enhancers	Brain Anterior Caudate	brain
6	chr3:46184400-46186000	Enhancers	Spleen	Spleen
7	chr3:46184600-46186000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr3:46184600-46186000	Enhancers	Brain Hippocampus Middle	brain
9	chr3:46184600-46186000	Enhancers	Fetal Stomach	stomach
10	chr3:46184600-46186200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr3:46184600-46186200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr3:46184600-46186400	Enhancers	Adipose Nuclei	Adipose
13	chr3:46184600-46186800	Enhancers	Fetal Lung	lung
14	chr3:46184600-46187000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr3:46184600-46194800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:46184800-46185800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:46184800-46186600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:46185000-46185800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr3:46185200-46185600	Enhancers	Fetal Muscle Trunk	muscle
20	chr3:46185200-46185800	Enhancers	Primary hematopoietic stem cells	blood
21	chr3:46185200-46185800	Enhancers	Fetal Brain Female	brain
22	chr3:46185200-46186000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr3:46185200-46186000	Enhancers	Lung	lung
24	chr3:46185200-46186400	Enhancers	Brain Germinal Matrix	brain
25	chr3:46185200-46186600	Enhancers	Brain Cingulate Gyrus	brain
26	chr3:46185400-46185600	Enhancers	Fetal Muscle Leg	muscle
27	chr3:46185400-46185600	Enhancers	Left Ventricle	heart
28	chr3:46185400-46186000	Enhancers	Small Intestine	intestine
29	chr3:46185400-46186800	Weak transcription	Fetal Thymus	thymus

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