Variant report

Variant	rs73830753
Chromosome Location	chr3:46153497-46153498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46148560..46157677-chr3:46203034..46208483,12	MCF-7	breast:
2	chr3:46129568..46133226-chr3:46150928..46153874,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183625	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs41366447	1.00[AMR][1000 genomes]
rs55640923	1.00[AMR][1000 genomes]
rs55751414	1.00[AMR][1000 genomes]
rs55931101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56109512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58433765	1.00[AMR][1000 genomes]
rs58770254	1.00[AMR][1000 genomes]
rs58794528	1.00[AMR][1000 genomes]
rs59159352	1.00[AMR][1000 genomes]
rs59998763	1.00[AMR][1000 genomes]
rs61610167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6767478	1.00[AMR][1000 genomes]
rs73830718	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830721	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830723	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830760	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830761	1.00[AMR][1000 genomes]
rs73830766	1.00[AMR][1000 genomes]
rs73830778	1.00[AMR][1000 genomes]
rs73830799	1.00[AMR][1000 genomes]
rs73830801	1.00[AMR][1000 genomes]
rs73830802	1.00[AMR][1000 genomes]
rs73833003	1.00[AMR][1000 genomes]
rs73833004	1.00[AMR][1000 genomes]
rs73833024	1.00[AMR][1000 genomes]
rs73833037	1.00[AMR][1000 genomes]
rs7626037	1.00[AMR][1000 genomes]
rs7643001	1.00[AMR][1000 genomes]
rs9834935	1.00[AMR][1000 genomes]
rs9840179	1.00[AMR][1000 genomes]
rs9860832	1.00[AMR][1000 genomes]
rs9865446	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46129400-46154200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:46146800-46164400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:46148400-46160200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:46149200-46158800	Enhancers	NHLF	lung
5	chr3:46149200-46159800	Enhancers	Placenta	Placenta
6	chr3:46150000-46157600	Enhancers	HMEC	breast
7	chr3:46150400-46158800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:46150600-46158600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:46150800-46154000	Weak transcription	HSMMtube	muscle
10	chr3:46151000-46155800	Weak transcription	Liver	Liver
11	chr3:46151000-46158800	Weak transcription	Stomach Mucosa	stomach
12	chr3:46151200-46153800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:46151200-46154200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:46151200-46156400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr3:46151400-46156000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:46151600-46154000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:46151800-46158200	Enhancers	NHDF-Ad	bronchial
18	chr3:46152000-46157400	Enhancers	NHEK	skin
19	chr3:46152600-46156200	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr3:46152600-46157000	Weak transcription	Fetal Stomach	stomach
21	chr3:46152600-46165200	Weak transcription	Spleen	Spleen
22	chr3:46152800-46153800	Enhancers	Primary B cells from cord blood	blood
23	chr3:46152800-46153800	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr3:46152800-46153800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:46152800-46154000	Weak transcription	HSMM	muscle
26	chr3:46152800-46155400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr3:46152800-46155600	Weak transcription	NH-A	brain
28	chr3:46152800-46158800	Enhancers	Hela-S3	cervix
29	chr3:46152800-46159400	Weak transcription	Lung	lung
30	chr3:46152800-46162400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr3:46153000-46155200	Weak transcription	Adipose Nuclei	Adipose
32	chr3:46153000-46155200	Weak transcription	Osteobl	bone
33	chr3:46153000-46155800	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr3:46153000-46156600	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr3:46153000-46157800	Weak transcription	Fetal Lung	lung
36	chr3:46153200-46155000	ZNF genes & repeats	GM12878-XiMat	blood
37	chr3:46153400-46153600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr3:46153400-46154400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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