Variant report

Variant	rs556841710
Chromosome Location	chr19:24526154-24526155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:57 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063538	chr19:23671507-24561180	Active TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv1066151	chr19:23830504-24561180	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv911472	chr19:23896204-24601680	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv911473	chr19:23901285-24545366	Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv911475	chr19:23957937-24545366	Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv579078	chr19:24209547-24631604	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv911477	chr19:24217064-24545366	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv911478	chr19:24241624-24545366	Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	esv2758751	chr19:24339720-24557363	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1058057	chr19:24346067-24596738	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1059342	chr19:24348669-24596738	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv2758492	chr19:24350565-24557363	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1066250	chr19:24352103-24596738	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1058203	chr19:24354312-24596738	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1063458	chr19:24357581-24596738	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1055774	chr19:24367758-24596738	Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv911483	chr19:24378400-24545366	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1065127	chr19:24379090-24596738	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1064304	chr19:24380497-24596738	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1060045	chr19:24380806-24596738	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1061973	chr19:24383950-24596738	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv1809858	chr19:24392064-24601177	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv1813039	chr19:24402054-24582985	Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
24	nsv1057292	chr19:24402242-24596738	Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
25	nsv911486	chr19:24407394-24531039	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
26	nsv1063583	chr19:24419363-24596738	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
27	nsv1065295	chr19:24420051-24596738	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
28	nsv469593	chr19:24424843-24622723	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
29	nsv482822	chr19:24424843-24622723	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
30	nsv1065604	chr19:24427991-24596738	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
31	nsv1059389	chr19:24430281-24596738	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
32	nsv1066401	chr19:24436636-24596738	ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
33	nsv1061144	chr19:24439471-24596738	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
34	nsv1060663	chr19:24451217-24596738	Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
35	nsv1055905	chr19:24454769-24596738	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
36	nsv1059986	chr19:24456812-24596738	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
37	nsv1061462	chr19:24460806-24596738	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers	n/a	n/a	inside rSNPs	n/a
38	nsv1062188	chr19:24461408-24596738	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
39	nsv1065328	chr19:24464086-24596738	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
40	nsv1062684	chr19:24464832-24596738	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS	n/a	n/a	inside rSNPs	n/a
41	nsv579101	chr19:24468847-24531039	Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	inside rSNPs	n/a
42	nsv579102	chr19:24468847-24552161	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers	n/a	n/a	inside rSNPs	n/a
43	nsv579103	chr19:24468847-24569587	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
44	esv3337800	chr19:24474629-24603549	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	n/a
45	nsv911490	chr19:24482072-24610794	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers	n/a	n/a	inside rSNPs	n/a
46	esv3449233	chr19:24487664-24528149	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
47	nsv579104	chr19:24487682-24574031	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers	n/a	n/a	inside rSNPs	n/a
48	nsv1056576	chr19:24487682-24596738	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
49	esv1822484	chr19:24503760-24596738	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
50	nsv1060092	chr19:24503760-24596738	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24507800-24577200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:24508000-24573400	ZNF genes & repeats	Liver	Liver
3	chr19:24508800-24569000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:24509200-24570800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:24513000-24571800	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr19:24513400-24527000	ZNF genes & repeats	Dnd41	blood
7	chr19:24513600-24530800	ZNF genes & repeats	Psoas Muscle	Psoas
8	chr19:24521200-24526600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
9	chr19:24522000-24576600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
10	chr19:24523200-24526400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
11	chr19:24524000-24526600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
12	chr19:24524600-24526400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
13	chr19:24524800-24526600	ZNF genes & repeats	Colon Smooth Muscle	Colon
14	chr19:24524800-24529600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr19:24524800-24530400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
16	chr19:24525200-24526400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
17	chr19:24525200-24542000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
18	chr19:24525400-24577200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
19	chr19:24525600-24526800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
20	chr19:24525600-24526800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
21	chr19:24525600-24526800	ZNF genes & repeats	HepG2	liver
22	chr19:24525800-24526400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
23	chr19:24525800-24526400	ZNF genes & repeats	Brain Angular Gyrus	brain
24	chr19:24525800-24526600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
25	chr19:24525800-24526800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr19:24526000-24526200	Flanking Bivalent TSS/Enh	ES-WA7 Cell Line	embryonic stem cell
27	chr19:24526000-24526200	ZNF genes & repeats	Esophagus	oesophagus
28	chr19:24526000-24526200	Active TSS	Right Atrium	heart
29	chr19:24526000-24526200	Flanking Bivalent TSS/Enh	NHLF	lung
30	chr19:24526000-24526400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
31	chr19:24526000-24526400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr19:24526000-24526400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr19:24526000-24526400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr19:24526000-24526400	Flanking Bivalent TSS/Enh	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr19:24526000-24526400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
36	chr19:24526000-24526400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr19:24526000-24526400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr19:24526000-24526400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr19:24526000-24526400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr19:24526000-24526400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr19:24526000-24526400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr19:24526000-24526400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
43	chr19:24526000-24526400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
44	chr19:24526000-24526400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
45	chr19:24526000-24526400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
46	chr19:24526000-24526400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
47	chr19:24526000-24526400	ZNF genes & repeats	Aorta	Aorta
48	chr19:24526000-24526400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
49	chr19:24526000-24526400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
50	chr19:24526000-24526400	ZNF genes & repeats	Brain Substantia Nigra	brain

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