Variant report

Variant	rs55740740
Chromosome Location	chr16:35282676-35282677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10521153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11864796	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17841538	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17841544	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1994034	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2200006	0.89[AMR][1000 genomes]
rs2219964	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55855405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55922897	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56244832	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56915461	1.00[AMR][1000 genomes]
rs57563212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57937787	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58106048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58140816	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61541042	1.00[AMR][1000 genomes]
rs6563886	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7184469	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7184498	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7197730	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs74016117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016118	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016120	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016123	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016124	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016131	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016132	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016133	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016135	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016138	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018489	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018493	1.00[EUR][1000 genomes]
rs8043965	1.00[AMR][1000 genomes]
rs8051969	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8060716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8189638	1.00[AMR][1000 genomes]
rs8189642	1.00[EUR][1000 genomes]
rs8189647	0.90[AMR][1000 genomes]
rs8189680	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056617	chr16:34543711-35283214	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv572385	chr16:34583626-35285582	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
3	nsv1059363	chr16:34935402-35283214	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv984237	chr16:35148868-35285801	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv572436	chr16:35186468-35285582	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
6	nsv433446	chr16:35204644-35284399	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
7	nsv572438	chr16:35204644-35285582	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
8	nsv572441	chr16:35244750-35285582	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
9	esv17681	chr16:35245230-35285750	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
10	nsv572445	chr16:35245313-35285582	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS	n/a	n/a	inside rSNPs	n/a
11	nsv572446	chr16:35245562-35285582	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
12	nsv572448	chr16:35245887-35285582	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:35279600-35283800	Weak transcription	Fetal Heart	heart
2	chr16:35280600-35284200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr16:35281600-35285400	Weak transcription	HSMMtube	muscle

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