Variant report

Variant	rs74016138
Chromosome Location	chr16:35175482-35175483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10521153	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11864796	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11864850	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11864877	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11865314	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1304752	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1532679	0.86[EUR][1000 genomes]
rs17052041	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17841538	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17841544	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1994034	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2121877	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2219964	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55740740	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55855405	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55873270	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55922897	0.90[AMR][1000 genomes]
rs56151540	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56244832	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56389464	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56915461	0.90[AMR][1000 genomes]
rs57563212	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57937787	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58106048	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58140816	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59208889	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59423657	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61263121	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61541042	0.90[AMR][1000 genomes]
rs6563886	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7184469	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7184498	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7187499	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7197730	0.86[EUR][1000 genomes]
rs74016117	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016118	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016119	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016120	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016123	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016124	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016127	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016129	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016131	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016132	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016133	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016134	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016135	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016142	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018477	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018478	0.86[AFR][1000 genomes]
rs74018480	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018481	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018483	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018489	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018493	1.00[EUR][1000 genomes]
rs8043965	0.90[AMR][1000 genomes]
rs8044470	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8046677	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8051969	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8052760	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8060716	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8189638	0.90[AMR][1000 genomes]
rs8189642	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8189647	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8189654	0.94[AFR][1000 genomes]
rs8189680	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs979576	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056617	chr16:34543711-35283214	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv572385	chr16:34583626-35285582	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
3	nsv1059363	chr16:34935402-35283214	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv511567	chr16:35111521-35192329	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv482777	chr16:35124884-35279329	Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv572391	chr16:35145957-35228412	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv984237	chr16:35148868-35285801	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv572392	chr16:35152890-35185490	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
9	nsv572393	chr16:35152890-35219549	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
10	nsv572394	chr16:35154536-35185259	ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
11	nsv572395	chr16:35162035-35185800	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
12	nsv572396	chr16:35162035-35232318	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
13	nsv572397	chr16:35168832-35185259	ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
14	nsv572398	chr16:35168832-35185800	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
15	nsv572399	chr16:35168832-35185903	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
16	nsv572400	chr16:35168832-35186578	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
17	nsv572401	chr16:35168832-35244412	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
18	nsv527568	chr16:35168832-35249350	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
19	nsv572402	chr16:35174439-35185903	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
20	nsv572403	chr16:35174439-35186578	ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
21	nsv572404	chr16:35174439-35228412	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:35175400-35176200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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