Variant report

Variant	rs74016142
Chromosome Location	chr16:35204269-35204270
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10521153	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11864796	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11864850	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11864877	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11865314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1304752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17052041	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17841538	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17841544	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1994034	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2121877	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2200006	0.89[AMR][1000 genomes]
rs2219964	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55740740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55855405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55873270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55922897	1.00[AMR][1000 genomes]
rs56151540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56244832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56389464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56915461	1.00[AMR][1000 genomes]
rs57563212	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57937787	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58106048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58140816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59208889	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61541042	1.00[AMR][1000 genomes]
rs6563886	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7184469	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7184498	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7187499	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7197730	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs74016117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016118	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016120	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016123	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016124	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016131	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016132	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016133	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016135	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016138	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018477	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018480	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018481	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018483	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018489	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018493	1.00[EUR][1000 genomes]
rs8043965	1.00[AMR][1000 genomes]
rs8044470	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8046677	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8051969	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8052760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8060716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8189638	1.00[AMR][1000 genomes]
rs8189642	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8189647	0.90[AMR][1000 genomes]
rs8189680	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056617	chr16:34543711-35283214	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv572385	chr16:34583626-35285582	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
3	nsv1059363	chr16:34935402-35283214	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv482777	chr16:35124884-35279329	Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv572391	chr16:35145957-35228412	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv984237	chr16:35148868-35285801	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv572393	chr16:35152890-35219549	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
8	nsv572396	chr16:35162035-35232318	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
9	nsv572401	chr16:35168832-35244412	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
10	nsv527568	chr16:35168832-35249350	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
11	nsv572404	chr16:35174439-35228412	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
12	nsv572414	chr16:35184306-35204644	ZNF genes & repeats Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
13	nsv572415	chr16:35184306-35213863	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers	n/a	n/a	inside rSNPs	diseases
14	nsv572416	chr16:35184306-35219549	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
15	nsv572417	chr16:35184306-35228412	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
16	nsv572418	chr16:35184306-35232318	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
17	nsv572419	chr16:35184306-35244412	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
18	nsv572424	chr16:35184425-35204644	Weak transcription Enhancers ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
19	nsv572430	chr16:35184962-35204644	Enhancers Active TSS ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
20	nsv572431	chr16:35184962-35228412	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
21	nsv572434	chr16:35185800-35228412	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
22	nsv572435	chr16:35185903-35257891	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
23	esv2830263	chr16:35185903-35269324	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
24	nsv572436	chr16:35186468-35285582	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
25	esv3331504	chr16:35198151-35262849	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
26	esv3383559	chr16:35198151-35263549	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
27	esv3393483	chr16:35203351-35262849	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:35200800-35208600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr16:35201200-35213200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr16:35201600-35205800	Weak transcription	NH-A	brain
4	chr16:35203600-35205800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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