Variant report
Variant | rs56244832 |
---|---|
Chromosome Location | chr16:35282323-35282324 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10521153 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11864796 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17841538 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17841544 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1994034 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2200006 | 0.89[AMR][1000 genomes] |
rs2219964 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs55740740 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs55855405 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs55922897 | 1.00[AMR][1000 genomes] |
rs56915461 | 1.00[AMR][1000 genomes] |
rs57563212 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57937787 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs58106048 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs58140816 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61541042 | 1.00[AMR][1000 genomes] |
rs6563886 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7184469 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7184498 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7197730 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs74016117 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74016118 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74016119 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74016120 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74016123 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74016124 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74016127 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74016129 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74016131 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74016132 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74016133 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74016134 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74016135 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74016138 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74016142 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74018489 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs74018493 | 1.00[EUR][1000 genomes] |
rs8043965 | 1.00[AMR][1000 genomes] |
rs8051969 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs8060716 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs8189638 | 1.00[AMR][1000 genomes] |
rs8189642 | 1.00[EUR][1000 genomes] |
rs8189647 | 0.90[AMR][1000 genomes] |
rs8189680 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1056617 | chr16:34543711-35283214 | ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 53 gene(s) | inside rSNPs | diseases |
2 | nsv572385 | chr16:34583626-35285582 | ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 51 gene(s) | inside rSNPs | diseases |
3 | nsv1059363 | chr16:34935402-35283214 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
4 | nsv984237 | chr16:35148868-35285801 | ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
5 | nsv572436 | chr16:35186468-35285582 | ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers | n/a | n/a | inside rSNPs | n/a |
6 | nsv433446 | chr16:35204644-35284399 | Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | n/a | n/a | inside rSNPs | n/a |
7 | nsv572438 | chr16:35204644-35285582 | ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer | n/a | n/a | inside rSNPs | n/a |
8 | nsv572441 | chr16:35244750-35285582 | ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | n/a | n/a | inside rSNPs | n/a |
9 | esv17681 | chr16:35245230-35285750 | ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | n/a | n/a | inside rSNPs | n/a |
10 | nsv572445 | chr16:35245313-35285582 | ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS | n/a | n/a | inside rSNPs | n/a |
11 | nsv572446 | chr16:35245562-35285582 | ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer | n/a | n/a | inside rSNPs | n/a |
12 | nsv572448 | chr16:35245887-35285582 | ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer | n/a | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:35279600-35283800 | Weak transcription | Fetal Heart | heart |
2 | chr16:35280600-35284200 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
3 | chr16:35281600-35285400 | Weak transcription | HSMMtube | muscle |