Variant report

Variant	rs55855405
Chromosome Location	chr16:35125875-35125876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10521153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11862087	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11864796	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11864850	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11864877	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11865314	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11865764	1.00[EUR][1000 genomes]
rs1304752	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1532679	0.86[EUR][1000 genomes]
rs17052041	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17841538	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17841544	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17841547	0.81[AMR][1000 genomes]
rs17841548	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1994034	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2121877	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2200006	0.89[AMR][1000 genomes]
rs2219964	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41466646	1.00[EUR][1000 genomes]
rs55740740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55873270	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55922897	1.00[AMR][1000 genomes]
rs56151540	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56244832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56389464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56915461	1.00[AMR][1000 genomes]
rs57563212	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57937787	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58106048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58140816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59208889	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59423657	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59902571	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60628599	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61263121	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61485382	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61541042	1.00[AMR][1000 genomes]
rs61649499	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6563877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6563878	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6563886	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7184469	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7184498	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7186948	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7187499	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7194464	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7197730	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs74016117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016118	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016120	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016123	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016124	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016131	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016132	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016133	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016138	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018438	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs74018442	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs74018444	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs74018445	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs74018456	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs74018457	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018458	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018459	0.86[EUR][1000 genomes]
rs74018461	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018462	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018463	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018465	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018466	0.90[AMR][1000 genomes]
rs74018468	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs74018469	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018470	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018471	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018473	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018477	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018480	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018481	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018483	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018489	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74018493	1.00[EUR][1000 genomes]
rs7499906	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7500529	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8043965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8044470	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8045492	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8046677	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8051145	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8051969	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8052760	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8053475	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8054608	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8059400	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8060716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8189638	1.00[AMR][1000 genomes]
rs8189642	1.00[EUR][1000 genomes]
rs8189647	0.90[AMR][1000 genomes]
rs8189680	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs979576	0.86[EUR][1000 genomes]
rs9921179	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067686	chr16:34202088-35147508	ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
2	nsv532260	chr16:34202088-35147508	Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
3	nsv521817	chr16:34221454-35168832	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
4	nsv521994	chr16:34221454-35168832	Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
5	esv34629	chr16:34449700-35139485	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
6	nsv431488	chr16:34467540-35139485	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
7	nsv1056617	chr16:34543711-35283214	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
8	nsv572385	chr16:34583626-35285582	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
9	nsv457486	chr16:34805859-35168832	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
10	nsv572387	chr16:34805859-35168832	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
11	nsv1059363	chr16:34935402-35283214	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
12	nsv1057154	chr16:34956840-35147509	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
13	nsv542907	chr16:34956840-35147509	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
14	nsv511567	chr16:35111521-35192329	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv482777	chr16:35124884-35279329	Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:35125400-35132400	Weak transcription	Stomach Mucosa	stomach

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