Variant report

Variant	rs55771115
Chromosome Location	chr9:101741741-101741742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101734796..101736324-chr9:101740072..101741805,2	MCF-7	breast:
2	chr9:101739430..101741862-chr9:101743138..101745419,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12379516	1.00[ASN][1000 genomes]
rs2151617	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2184214	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35250850	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41283636	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41283638	1.00[ASN][1000 genomes]
rs55697146	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55881088	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55980075	1.00[ASN][1000 genomes]
rs55996120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56358572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561172	1.00[ASN][1000 genomes]
rs62561176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561243	0.85[EUR][1000 genomes]
rs62561248	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561249	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561250	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72739264	1.00[ASN][1000 genomes]
rs72739265	1.00[ASN][1000 genomes]
rs72739266	1.00[ASN][1000 genomes]
rs882727	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101728000-101749400	Weak transcription	Aorta	Aorta
2	chr9:101737800-101742800	Enhancers	Adipose Nuclei	Adipose
3	chr9:101737800-101760800	Weak transcription	Gastric	stomach
4	chr9:101739200-101742000	Enhancers	Stomach Smooth Muscle	stomach
5	chr9:101739600-101742000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:101740000-101746200	Weak transcription	Psoas Muscle	Psoas
7	chr9:101740000-101746400	Weak transcription	Fetal Stomach	stomach
8	chr9:101740200-101741800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:101740400-101742600	Weak transcription	Left Ventricle	heart
10	chr9:101740400-101746200	Weak transcription	Right Ventricle	heart
11	chr9:101740400-101749200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr9:101740400-101753400	Weak transcription	Spleen	Spleen
13	chr9:101740400-101756800	Weak transcription	Ovary	ovary
14	chr9:101740600-101742000	Weak transcription	HSMMtube	muscle
15	chr9:101740600-101742400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:101740600-101742600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:101740600-101745400	Weak transcription	Right Atrium	heart
18	chr9:101740600-101749200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr9:101740800-101742600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:101740800-101742600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:101740800-101745000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:101740800-101745000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr9:101740800-101745400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr9:101740800-101745600	Weak transcription	Placenta	Placenta
25	chr9:101740800-101745600	Weak transcription	Pancreas	Pancrea
26	chr9:101740800-101750200	Weak transcription	Esophagus	oesophagus
27	chr9:101740800-101751400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr9:101741000-101742400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr9:101741000-101742400	Weak transcription	HSMM	muscle
30	chr9:101741000-101745200	Weak transcription	NHDF-Ad	bronchial
31	chr9:101741200-101745800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr9:101741400-101741800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr9:101741400-101741800	Weak transcription	Fetal Muscle Leg	muscle
34	chr9:101741600-101741800	Enhancers	Rectal Smooth Muscle	rectum
35	chr9:101741600-101742600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr9:101741600-101742800	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links