Variant report

Variant	rs72739265
Chromosome Location	chr9:101850689-101850690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12379516	1.00[ASN][1000 genomes]
rs2151617	1.00[ASN][1000 genomes]
rs2184214	1.00[ASN][1000 genomes]
rs35250850	1.00[ASN][1000 genomes]
rs41283636	1.00[ASN][1000 genomes]
rs41283638	1.00[ASN][1000 genomes]
rs55697146	1.00[ASN][1000 genomes]
rs55771115	1.00[ASN][1000 genomes]
rs55881088	1.00[ASN][1000 genomes]
rs55980075	1.00[ASN][1000 genomes]
rs55996120	1.00[ASN][1000 genomes]
rs56358572	1.00[ASN][1000 genomes]
rs62561172	1.00[ASN][1000 genomes]
rs62561176	1.00[ASN][1000 genomes]
rs62561177	1.00[ASN][1000 genomes]
rs62561178	1.00[ASN][1000 genomes]
rs62561179	1.00[ASN][1000 genomes]
rs62561181	1.00[ASN][1000 genomes]
rs62561185	1.00[ASN][1000 genomes]
rs62561248	1.00[ASN][1000 genomes]
rs62561249	1.00[ASN][1000 genomes]
rs62561250	1.00[ASN][1000 genomes]
rs72739264	1.00[ASN][1000 genomes]
rs72739266	1.00[ASN][1000 genomes]
rs882727	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101840000-101853800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr9:101846200-101858800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:101848600-101853400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr9:101848800-101852800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:101848800-101853800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr9:101849000-101851600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:101849200-101852200	Weak transcription	NHDF-Ad	bronchial
8	chr9:101849200-101852400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:101849400-101852600	Weak transcription	HSMM	muscle
10	chr9:101849800-101852400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:101849800-101852600	Weak transcription	Osteobl	bone
12	chr9:101849800-101853200	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr9:101849800-101853800	Weak transcription	Placenta	Placenta
14	chr9:101850000-101852200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:101850400-101853200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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