Variant report

Variant	rs62561178
Chromosome Location	chr9:101745606-101745607
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101744002..101749570-chr9:101754118..101758389,6	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12379516	1.00[ASN][1000 genomes]
rs2151617	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2184214	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35250850	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41283636	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41283638	1.00[ASN][1000 genomes]
rs55697146	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55881088	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55980075	1.00[ASN][1000 genomes]
rs55996120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56358572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561172	1.00[ASN][1000 genomes]
rs62561176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561243	0.85[EUR][1000 genomes]
rs62561248	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561249	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561250	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72739264	1.00[ASN][1000 genomes]
rs72739265	1.00[ASN][1000 genomes]
rs72739266	1.00[ASN][1000 genomes]
rs882727	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101728000-101749400	Weak transcription	Aorta	Aorta
2	chr9:101737800-101760800	Weak transcription	Gastric	stomach
3	chr9:101740000-101746200	Weak transcription	Psoas Muscle	Psoas
4	chr9:101740000-101746400	Weak transcription	Fetal Stomach	stomach
5	chr9:101740400-101746200	Weak transcription	Right Ventricle	heart
6	chr9:101740400-101749200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:101740400-101753400	Weak transcription	Spleen	Spleen
8	chr9:101740400-101756800	Weak transcription	Ovary	ovary
9	chr9:101740600-101749200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:101740800-101750200	Weak transcription	Esophagus	oesophagus
11	chr9:101740800-101751400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr9:101741200-101745800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:101741800-101746400	Enhancers	Fetal Muscle Leg	muscle
14	chr9:101741800-101748800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr9:101742600-101746000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr9:101742800-101748600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:101742800-101750400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:101742800-101754200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:101743000-101746400	Weak transcription	Left Ventricle	heart
20	chr9:101744800-101746800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr9:101745000-101746600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:101745000-101746600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr9:101745000-101746600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr9:101745000-101746600	Enhancers	Fetal Muscle Trunk	muscle
25	chr9:101745000-101747000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr9:101745200-101746200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
27	chr9:101745200-101746600	Enhancers	NH-A	brain
28	chr9:101745200-101746800	Enhancers	HSMM	muscle
29	chr9:101745200-101746800	Enhancers	HSMMtube	muscle
30	chr9:101745200-101746800	Enhancers	NHLF	lung
31	chr9:101745200-101747000	Enhancers	NHDF-Ad	bronchial
32	chr9:101745400-101746000	Enhancers	Osteobl	bone
33	chr9:101745400-101746600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr9:101745400-101746600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr9:101745400-101746600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr9:101745400-101746800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr9:101745400-101746800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr9:101745400-101747000	Enhancers	Right Atrium	heart
39	chr9:101745600-101746000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr9:101745600-101746400	Enhancers	Pancreas	Pancrea
41	chr9:101745600-101746600	Enhancers	Placenta	Placenta
42	chr9:101745600-101746600	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr9:101745600-101747000	Enhancers	Adipose Nuclei	Adipose

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