Variant report

Variant	rs62561179
Chromosome Location	chr9:101748979-101748980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101748657..101752493-chr9:101836719..101838715,3	K562	blood:
2	chr9:101747842..101750157-chr9:101758155..101760265,2	MCF-7	breast:
3	chr9:101742011..101744498-chr9:101748952..101750643,2	MCF-7	breast:
4	chr9:101744002..101749570-chr9:101754118..101758389,6	K562	blood:
5	chr9:101747587..101749233-chr9:101899420..101901955,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12379516	1.00[ASN][1000 genomes]
rs2151617	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2184214	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35250850	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41283636	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41283638	1.00[ASN][1000 genomes]
rs55697146	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55881088	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55980075	1.00[ASN][1000 genomes]
rs55996120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56358572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561172	1.00[ASN][1000 genomes]
rs62561176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561243	0.85[EUR][1000 genomes]
rs62561248	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561249	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561250	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72739264	1.00[ASN][1000 genomes]
rs72739265	1.00[ASN][1000 genomes]
rs72739266	1.00[ASN][1000 genomes]
rs882727	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101728000-101749400	Weak transcription	Aorta	Aorta
2	chr9:101737800-101760800	Weak transcription	Gastric	stomach
3	chr9:101740400-101749200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:101740400-101753400	Weak transcription	Spleen	Spleen
5	chr9:101740400-101756800	Weak transcription	Ovary	ovary
6	chr9:101740600-101749200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr9:101740800-101750200	Weak transcription	Esophagus	oesophagus
8	chr9:101740800-101751400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr9:101742800-101750400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:101742800-101754200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr9:101746400-101750600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:101746600-101749200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:101746600-101749200	Weak transcription	Placenta	Placenta
14	chr9:101746600-101749200	Weak transcription	Right Ventricle	heart
15	chr9:101746600-101749400	Weak transcription	Lung	lung
16	chr9:101746800-101749000	Weak transcription	HSMMtube	muscle
17	chr9:101746800-101749600	Weak transcription	NHLF	lung
18	chr9:101746800-101750400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:101746800-101754400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:101747000-101749200	Weak transcription	Right Atrium	heart
21	chr9:101747000-101749400	Weak transcription	NHDF-Ad	bronchial
22	chr9:101747800-101749200	Strong transcription	Fetal Muscle Leg	muscle
23	chr9:101747800-101749200	Strong transcription	Fetal Stomach	stomach
24	chr9:101747800-101750200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr9:101747800-101751200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:101748000-101749200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr9:101748000-101749200	Strong transcription	Adipose Nuclei	Adipose
28	chr9:101748000-101749200	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr9:101748200-101749200	Weak transcription	Left Ventricle	heart
30	chr9:101748200-101749200	Genic enhancers	Stomach Smooth Muscle	stomach
31	chr9:101748200-101749400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr9:101748200-101751600	Weak transcription	Pancreas	Pancrea
33	chr9:101748400-101749200	Strong transcription	Fetal Muscle Trunk	muscle
34	chr9:101748600-101749400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr9:101748800-101750200	Enhancers	Rectal Smooth Muscle	rectum

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