Variant report

Variant	rs55881088
Chromosome Location	chr9:101773150-101773151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12379516	1.00[ASN][1000 genomes]
rs2151617	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2184214	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35250850	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41283636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41283638	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55697146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55771115	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55980075	1.00[ASN][1000 genomes]
rs55996120	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56358572	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561172	1.00[ASN][1000 genomes]
rs62561176	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561177	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561178	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561179	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561181	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561185	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561243	0.97[EUR][1000 genomes]
rs62561248	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62561250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72739264	1.00[ASN][1000 genomes]
rs72739265	1.00[ASN][1000 genomes]
rs72739266	1.00[ASN][1000 genomes]
rs882727	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101761800-101777800	Weak transcription	Pancreas	Pancrea
3	chr9:101761800-101785200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr9:101763600-101778000	Weak transcription	HSMMtube	muscle
5	chr9:101764200-101775400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr9:101767600-101782000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr9:101768200-101777200	Enhancers	Hela-S3	cervix
8	chr9:101768800-101778000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:101768800-101787200	Weak transcription	Right Atrium	heart
10	chr9:101769000-101790400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr9:101769200-101777600	Weak transcription	Right Ventricle	heart
12	chr9:101769400-101777800	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:101769400-101777800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:101770800-101775200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr9:101771400-101776600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr9:101772200-101773200	Strong transcription	Stomach Smooth Muscle	stomach
17	chr9:101772200-101773400	ZNF genes & repeats	Fetal Muscle Leg	muscle
18	chr9:101772400-101773200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:101772400-101774000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:101772600-101773200	ZNF genes & repeats	Adipose Nuclei	Adipose
21	chr9:101772800-101778000	Weak transcription	Ovary	ovary
22	chr9:101773000-101775400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr9:101773000-101775400	Weak transcription	K562	blood
24	chr9:101773000-101776200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr9:101773000-101777000	Weak transcription	Placenta	Placenta
26	chr9:101773000-101777400	Weak transcription	Fetal Stomach	stomach
27	chr9:101773000-101777800	Weak transcription	Left Ventricle	heart
28	chr9:101773000-101793600	Weak transcription	Aorta	Aorta

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