Variant report

Variant	rs55859328
Chromosome Location	chr15:82378194-82378195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:82376238..82379058-chr15:82380480..82382562,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259518	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs55770061	1.00[AMR][1000 genomes]
rs55787821	1.00[AMR][1000 genomes]
rs55889202	1.00[AMR][1000 genomes]
rs55899409	1.00[AMR][1000 genomes]
rs55933319	1.00[AMR][1000 genomes]
rs55994913	1.00[AMR][1000 genomes]
rs56029996	1.00[AMR][1000 genomes]
rs56050367	1.00[AMR][1000 genomes]
rs56126531	1.00[AMR][1000 genomes]
rs72749523	1.00[AMR][1000 genomes]
rs72749527	1.00[AMR][1000 genomes]
rs72749528	1.00[AMR][1000 genomes]
rs72749529	1.00[AMR][1000 genomes]
rs72749530	1.00[AMR][1000 genomes]
rs72749531	1.00[AMR][1000 genomes]
rs72749532	1.00[AMR][1000 genomes]
rs72749534	1.00[AMR][1000 genomes]
rs72749535	1.00[AMR][1000 genomes]
rs72749537	1.00[AMR][1000 genomes]
rs72749538	1.00[AMR][1000 genomes]
rs72749539	1.00[AMR][1000 genomes]
rs72749545	1.00[AMR][1000 genomes]
rs72749547	1.00[AMR][1000 genomes]
rs72749548	1.00[AMR][1000 genomes]
rs72749551	1.00[AMR][1000 genomes]
rs72749552	1.00[AMR][1000 genomes]
rs72749565	1.00[AMR][1000 genomes]
rs72749566	1.00[AMR][1000 genomes]
rs72749570	1.00[AMR][1000 genomes]
rs72749573	1.00[AMR][1000 genomes]
rs72749577	1.00[AMR][1000 genomes]
rs72749581	1.00[AMR][1000 genomes]
rs72749582	1.00[AMR][1000 genomes]
rs72749585	1.00[AMR][1000 genomes]
rs72749587	1.00[AMR][1000 genomes]
rs72749592	1.00[AMR][1000 genomes]
rs72749593	1.00[AMR][1000 genomes]
rs72749595	1.00[AMR][1000 genomes]
rs72749596	1.00[AMR][1000 genomes]
rs72749598	1.00[AMR][1000 genomes]
rs72749600	1.00[AMR][1000 genomes]
rs72749602	1.00[AMR][1000 genomes]
rs72751603	1.00[AMR][1000 genomes]
rs72751606	1.00[AMR][1000 genomes]
rs72751611	1.00[AMR][1000 genomes]
rs72751612	1.00[AMR][1000 genomes]
rs72751613	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv457211	chr15:82362125-82396347	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv570241	chr15:82362125-82396347	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv570242	chr15:82370616-82409727	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82375000-82380600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr15:82375000-82381000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:82378000-82378800	Weak transcription	K562	blood

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