Variant report

Variant	rs72749530
Chromosome Location	chr15:82439928-82439929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:82421352..82423099-chr15:82438415..82441002,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs55769553	0.83[AMR][1000 genomes]
rs55770061	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55787821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55859328	1.00[AMR][1000 genomes]
rs55889202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55899409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55933319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55994913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56029996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56050367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56126531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751612	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72751613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751663	0.83[AMR][1000 genomes]
rs72751664	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82399000-82452200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:82408000-82443600	Weak transcription	Aorta	Aorta
3	chr15:82416200-82443400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:82416200-82452400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:82416400-82454000	Weak transcription	Colonic Mucosa	Colon
6	chr15:82416600-82443800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:82419200-82470600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:82420000-82457000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:82420400-82458400	Weak transcription	HepG2	liver
10	chr15:82421200-82443800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr15:82423000-82443600	Weak transcription	Right Ventricle	heart
12	chr15:82423000-82443800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr15:82423200-82443800	Weak transcription	Psoas Muscle	Psoas
14	chr15:82423200-82454800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr15:82425000-82443400	Weak transcription	Fetal Intestine Small	intestine
16	chr15:82425800-82443200	Weak transcription	Fetal Brain Female	brain
17	chr15:82426000-82457000	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr15:82426800-82443400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:82426800-82443600	Weak transcription	Gastric	stomach
20	chr15:82426800-82443600	Weak transcription	Spleen	Spleen
21	chr15:82427000-82443400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:82427200-82443600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr15:82427600-82443000	Weak transcription	Brain Germinal Matrix	brain
24	chr15:82427600-82456600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr15:82428400-82443600	Weak transcription	Pancreas	Pancrea
26	chr15:82430400-82452400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr15:82430400-82455200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr15:82431000-82443400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr15:82431200-82440800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr15:82431200-82441800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr15:82431200-82442400	Weak transcription	Primary B cells from peripheral blood	blood
32	chr15:82431200-82443000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr15:82431200-82443200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr15:82431200-82443400	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr15:82431200-82443400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr15:82431200-82443600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr15:82431200-82443600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr15:82431200-82443600	Weak transcription	Thymus	Thymus
39	chr15:82431200-82443800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr15:82431200-82448200	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr15:82431200-82450000	Weak transcription	GM12878-XiMat	blood
42	chr15:82431200-82452400	Weak transcription	Esophagus	oesophagus
43	chr15:82431200-82455000	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr15:82431200-82461200	Weak transcription	Small Intestine	intestine
45	chr15:82431400-82443600	Weak transcription	Fetal Thymus	thymus
46	chr15:82432600-82441800	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr15:82432600-82441800	Weak transcription	Liver	Liver
48	chr15:82432600-82442600	Weak transcription	Brain Substantia Nigra	brain
49	chr15:82432600-82443000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr15:82432600-82443400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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