Variant report

Variant	rs72749547
Chromosome Location	chr15:82463512-82463513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs55769553	0.83[AMR][1000 genomes]
rs55770061	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55787821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55859328	1.00[AMR][1000 genomes]
rs55889202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55899409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55933319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55994913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56029996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56050367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56126531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56261932	0.83[AMR][1000 genomes]
rs72749523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751612	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72751613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751663	0.83[AMR][1000 genomes]
rs72751664	0.83[AMR][1000 genomes]
rs72751669	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv457212	chr15:82454283-82573255	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv570243	chr15:82454283-82573255	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv457213	chr15:82456227-82573255	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv570244	chr15:82456227-82573255	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv570245	chr15:82456227-82591082	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv977858	chr15:82458762-82463635	Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82419200-82470600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:82432600-82476400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr15:82432600-82552800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr15:82439800-82465600	Weak transcription	K562	blood
5	chr15:82441400-82469600	Weak transcription	Fetal Brain Male	brain
6	chr15:82444400-82465200	Weak transcription	Brain Germinal Matrix	brain
7	chr15:82444600-82495800	Weak transcription	Fetal Intestine Small	intestine
8	chr15:82451000-82469800	Weak transcription	Psoas Muscle	Psoas
9	chr15:82452600-82470600	Weak transcription	Esophagus	oesophagus
10	chr15:82453200-82464000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr15:82453400-82464600	Weak transcription	NHEK	skin
12	chr15:82455400-82464600	Weak transcription	HMEC	breast
13	chr15:82455400-82466600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:82455400-82466800	Weak transcription	Brain Substantia Nigra	brain
15	chr15:82455400-82475200	Weak transcription	Brain Hippocampus Middle	brain
16	chr15:82455400-82475200	Weak transcription	Pancreas	Pancrea
17	chr15:82455600-82464600	Weak transcription	Placenta	Placenta
18	chr15:82455600-82469200	Weak transcription	Brain Anterior Caudate	brain
19	chr15:82455600-82475200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr15:82455800-82464600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:82455800-82467200	Weak transcription	Spleen	Spleen
22	chr15:82455800-82469800	Weak transcription	Ovary	ovary
23	chr15:82456000-82469800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:82456000-82475800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:82456000-82475800	Weak transcription	Lung	lung
26	chr15:82456000-82510000	Weak transcription	Thymus	Thymus
27	chr15:82456200-82469000	Weak transcription	Osteobl	bone
28	chr15:82456200-82469600	Weak transcription	HSMMtube	muscle
29	chr15:82456200-82470000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr15:82456200-82475200	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr15:82456200-82475600	Weak transcription	Fetal Brain Female	brain
32	chr15:82456400-82469400	Weak transcription	HSMM	muscle
33	chr15:82456400-82470600	Weak transcription	Left Ventricle	heart
34	chr15:82456400-82473000	Weak transcription	Fetal Intestine Large	intestine
35	chr15:82456400-82474200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr15:82456400-82475200	Weak transcription	Fetal Muscle Leg	muscle
37	chr15:82456400-82475200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr15:82456400-82475400	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr15:82456400-82475800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr15:82456400-82480600	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr15:82456400-82487000	Weak transcription	Primary B cells from peripheral blood	blood
42	chr15:82456400-82502200	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr15:82456400-82502400	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr15:82456400-82502600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr15:82456400-82502800	Weak transcription	Gastric	stomach
46	chr15:82456400-82505400	Weak transcription	Dnd41	blood
47	chr15:82456400-82505600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr15:82456400-82505600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr15:82456600-82466600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr15:82456600-82466600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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