Variant report

Variant	rs72749528
Chromosome Location	chr15:82433225-82433226
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:82432437..82434618-chr15:82436899..82439260,2	MCF-7	breast:
2	chr15:82400583..82401510-chr15:82431758..82433239,16	MCF-7	breast:
3	chr15:82424144..82425885-chr15:82431289..82433616,2	K562	blood:
4	chr15:82432771..82435316-chr15:82440344..82442929,2	K562	blood:
5	chr15:82423103..82426448-chr15:82429723..82433616,4	K562	blood:
6	chr15:82431499..82434866-chr15:82441915..82444519,3	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs55770061	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55787821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55859328	1.00[AMR][1000 genomes]
rs55889202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55899409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55933319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55994913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56029996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56050367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56126531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751612	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72751613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82399000-82452200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:82408000-82443600	Weak transcription	Aorta	Aorta
3	chr15:82416200-82443400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:82416200-82452400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:82416400-82454000	Weak transcription	Colonic Mucosa	Colon
6	chr15:82416600-82443800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:82419200-82470600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:82420000-82457000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:82420400-82458400	Weak transcription	HepG2	liver
10	chr15:82420600-82436200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:82421200-82443800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr15:82421400-82439000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:82423000-82443600	Weak transcription	Right Ventricle	heart
14	chr15:82423000-82443800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr15:82423200-82443800	Weak transcription	Psoas Muscle	Psoas
16	chr15:82423200-82454800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr15:82425000-82443400	Weak transcription	Fetal Intestine Small	intestine
18	chr15:82425400-82435800	Weak transcription	Fetal Stomach	stomach
19	chr15:82425400-82436200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:82425600-82438600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:82425600-82439000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr15:82425800-82443200	Weak transcription	Fetal Brain Female	brain
23	chr15:82426000-82457000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr15:82426400-82435600	Weak transcription	Lung	lung
25	chr15:82426800-82443400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:82426800-82443600	Weak transcription	Gastric	stomach
27	chr15:82426800-82443600	Weak transcription	Spleen	Spleen
28	chr15:82427000-82443400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:82427200-82443600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:82427600-82443000	Weak transcription	Brain Germinal Matrix	brain
31	chr15:82427600-82456600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr15:82428400-82438800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr15:82428400-82443600	Weak transcription	Pancreas	Pancrea
34	chr15:82428800-82439200	Weak transcription	Fetal Muscle Leg	muscle
35	chr15:82430400-82439000	Weak transcription	Placenta	Placenta
36	chr15:82430400-82452400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr15:82430400-82455200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr15:82431000-82435800	Weak transcription	Brain Hippocampus Middle	brain
39	chr15:82431000-82443400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr15:82431200-82433800	Enhancers	Muscle Satellite Cultured Cells	--
41	chr15:82431200-82433800	Weak transcription	Fetal Intestine Large	intestine
42	chr15:82431200-82434400	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr15:82431200-82434400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr15:82431200-82434400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:82431200-82434600	Weak transcription	Left Ventricle	heart
46	chr15:82431200-82435400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr15:82431200-82435800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr15:82431200-82435800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr15:82431200-82435800	Weak transcription	K562	blood
50	chr15:82431200-82436000	Weak transcription	Primary monocytes fromperipheralblood	blood

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