Variant report

Variant	rs72749527
Chromosome Location	chr15:82431145-82431146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:82336645..82339612-chr15:82430236..82432399,2	MCF-7	breast:
2	chr15:82337367..82339936-chr15:82429505..82432664,3	MCF-7	breast:
3	chr15:82423103..82426448-chr15:82429723..82433616,4	K562	blood:
4	chr15:82403068..82405226-chr15:82430485..82432551,2	K562	blood:

Variant related genes	Relation type
ENSG00000183496	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs55770061	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55787821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55859328	1.00[AMR][1000 genomes]
rs55889202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55899409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55933319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55994913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56029996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56050367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56126531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751612	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72751613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82399000-82452200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:82408000-82443600	Weak transcription	Aorta	Aorta
3	chr15:82408400-82431800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:82408800-82432400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr15:82415600-82431800	Weak transcription	HUVEC	blood vessel
6	chr15:82416200-82443400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr15:82416200-82452400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:82416400-82431400	Strong transcription	Primary T cells from cord blood	blood
9	chr15:82416400-82454000	Weak transcription	Colonic Mucosa	Colon
10	chr15:82416600-82443800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:82419000-82431200	Strong transcription	Primary B cells from peripheral blood	blood
12	chr15:82419200-82470600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:82420000-82457000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:82420200-82431200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:82420200-82431200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:82420200-82431200	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr15:82420200-82431400	Strong transcription	Dnd41	blood
18	chr15:82420200-82432000	Weak transcription	Brain Anterior Caudate	brain
19	chr15:82420400-82458400	Weak transcription	HepG2	liver
20	chr15:82420600-82436200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr15:82420800-82431400	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr15:82420800-82432000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr15:82421200-82432200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:82421200-82443800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr15:82421400-82431200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:82421400-82439000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr15:82422400-82432000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr15:82422600-82432000	Weak transcription	Brain Substantia Nigra	brain
29	chr15:82423000-82431200	Strong transcription	Fetal Intestine Large	intestine
30	chr15:82423000-82432400	Weak transcription	Ovary	ovary
31	chr15:82423000-82443600	Weak transcription	Right Ventricle	heart
32	chr15:82423000-82443800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr15:82423200-82443800	Weak transcription	Psoas Muscle	Psoas
34	chr15:82423200-82454800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr15:82423600-82431200	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr15:82423600-82432000	Weak transcription	Brain Angular Gyrus	brain
37	chr15:82424200-82431200	Strong transcription	Duodenum Mucosa	Duodenum
38	chr15:82424400-82431200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr15:82424400-82431400	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr15:82424600-82431200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:82425000-82431200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr15:82425000-82443400	Weak transcription	Fetal Intestine Small	intestine
43	chr15:82425400-82435800	Weak transcription	Fetal Stomach	stomach
44	chr15:82425400-82436200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr15:82425600-82438600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:82425600-82439000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr15:82425800-82443200	Weak transcription	Fetal Brain Female	brain
48	chr15:82426000-82431200	Strong transcription	NHEK	skin
49	chr15:82426000-82457000	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr15:82426200-82431200	Strong transcription	Primary T cells fromperipheralblood	blood

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