Variant report

Variant	rs55889202
Chromosome Location	chr15:82426563-82426564
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:82421528..82423161-chr15:82424942..82426768,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs55770061	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55787821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55859328	1.00[AMR][1000 genomes]
rs55899409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55933319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55994913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56029996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56050367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56126531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751612	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72751613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82399000-82452200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:82405600-82428000	Weak transcription	Fetal Muscle Leg	muscle
3	chr15:82406200-82430200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:82408000-82443600	Weak transcription	Aorta	Aorta
5	chr15:82408400-82431800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:82408800-82432400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr15:82411200-82428400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr15:82414400-82429600	Weak transcription	Brain Hippocampus Middle	brain
9	chr15:82415400-82428200	Weak transcription	Fetal Heart	heart
10	chr15:82415600-82426600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr15:82415600-82430200	Weak transcription	Stomach Mucosa	stomach
12	chr15:82415600-82431800	Weak transcription	HUVEC	blood vessel
13	chr15:82416200-82443400	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr15:82416200-82452400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:82416400-82427000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:82416400-82430400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:82416400-82431400	Strong transcription	Primary T cells from cord blood	blood
18	chr15:82416400-82454000	Weak transcription	Colonic Mucosa	Colon
19	chr15:82416600-82443800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:82419000-82428000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr15:82419000-82431200	Strong transcription	Primary B cells from peripheral blood	blood
22	chr15:82419200-82470600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:82419600-82428200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:82420000-82457000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr15:82420200-82431200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:82420200-82431200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr15:82420200-82431200	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr15:82420200-82431400	Strong transcription	Dnd41	blood
29	chr15:82420200-82432000	Weak transcription	Brain Anterior Caudate	brain
30	chr15:82420400-82458400	Weak transcription	HepG2	liver
31	chr15:82420600-82436200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr15:82420800-82428000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr15:82420800-82431400	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr15:82420800-82432000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr15:82421200-82432200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:82421200-82443800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr15:82421400-82428600	Weak transcription	K562	blood
38	chr15:82421400-82431200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr15:82421400-82439000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr15:82421600-82430400	Weak transcription	Small Intestine	intestine
41	chr15:82422000-82426600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr15:82422000-82428600	Strong transcription	Fetal Thymus	thymus
43	chr15:82422200-82427000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr15:82422400-82432000	Weak transcription	Brain Cingulate Gyrus	brain
45	chr15:82422600-82430000	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr15:82422600-82432000	Weak transcription	Brain Substantia Nigra	brain
47	chr15:82422800-82428200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr15:82422800-82430400	Weak transcription	Fetal Kidney	kidney
49	chr15:82423000-82429600	Weak transcription	Colon Smooth Muscle	Colon
50	chr15:82423000-82431200	Strong transcription	Fetal Intestine Large	intestine

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