Variant report

Variant	rs72749538
Chromosome Location	chr15:82449329-82449330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs55769553	0.83[AMR][1000 genomes]
rs55770061	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55787821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55859328	1.00[AMR][1000 genomes]
rs55889202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55899409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55933319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55994913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56029996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56050367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56126531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56261932	0.83[AMR][1000 genomes]
rs72749523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751612	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72751613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751663	0.83[AMR][1000 genomes]
rs72751664	0.83[AMR][1000 genomes]
rs72751669	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82399000-82452200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:82416200-82452400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:82416400-82454000	Weak transcription	Colonic Mucosa	Colon
4	chr15:82419200-82470600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:82420000-82457000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr15:82420400-82458400	Weak transcription	HepG2	liver
7	chr15:82423200-82454800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr15:82426000-82457000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:82427600-82456600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:82430400-82452400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr15:82430400-82455200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:82431200-82450000	Weak transcription	GM12878-XiMat	blood
13	chr15:82431200-82452400	Weak transcription	Esophagus	oesophagus
14	chr15:82431200-82455000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr15:82431200-82461200	Weak transcription	Small Intestine	intestine
16	chr15:82432600-82454800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr15:82432600-82454800	Weak transcription	Colon Smooth Muscle	Colon
18	chr15:82432600-82457800	Weak transcription	Fetal Lung	lung
19	chr15:82432600-82476400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:82432600-82552800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr15:82433400-82453800	Weak transcription	Stomach Mucosa	stomach
22	chr15:82433400-82458400	Weak transcription	Fetal Kidney	kidney
23	chr15:82438400-82456800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr15:82439400-82455400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:82439800-82451200	Weak transcription	NH-A	brain
26	chr15:82439800-82454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr15:82439800-82465600	Weak transcription	K562	blood
28	chr15:82440400-82452000	Weak transcription	Osteobl	bone
29	chr15:82440400-82455000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:82440400-82458200	Weak transcription	HUVEC	blood vessel
31	chr15:82440800-82452200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr15:82440800-82453000	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr15:82441400-82469600	Weak transcription	Fetal Brain Male	brain
34	chr15:82442800-82454400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr15:82443000-82453200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr15:82443000-82454800	Weak transcription	Brain Hippocampus Middle	brain
37	chr15:82443400-82450200	Strong transcription	HMEC	breast
38	chr15:82443400-82457000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr15:82444000-82452400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr15:82444000-82452400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:82444000-82452400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:82444000-82452400	Weak transcription	Pancreas	Pancrea
43	chr15:82444000-82455800	Weak transcription	Fetal Brain Female	brain
44	chr15:82444200-82452200	Weak transcription	Lung	lung
45	chr15:82444200-82453600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr15:82444200-82454400	Weak transcription	Aorta	Aorta
47	chr15:82444200-82454400	Weak transcription	Spleen	Spleen
48	chr15:82444400-82449400	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr15:82444400-82450600	Weak transcription	Psoas Muscle	Psoas
50	chr15:82444400-82451200	Weak transcription	Fetal Heart	heart

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