Variant report

Variant	rs72749532
Chromosome Location	chr15:82444154-82444155
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:82440975..82444665-chr15:82449523..82452349,3	K562	blood:
2	chr15:82431499..82434866-chr15:82441915..82444519,3	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs55769553	0.83[AMR][1000 genomes]
rs55770061	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55787821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55859328	1.00[AMR][1000 genomes]
rs55889202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55899409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55933319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55994913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56029996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56050367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56126531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749527	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749566	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749596	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72749602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751611	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751612	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72751613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72751663	0.83[AMR][1000 genomes]
rs72751664	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82399000-82452200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:82416200-82452400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:82416400-82454000	Weak transcription	Colonic Mucosa	Colon
4	chr15:82419200-82470600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:82420000-82457000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr15:82420400-82458400	Weak transcription	HepG2	liver
7	chr15:82423200-82454800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr15:82426000-82457000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:82427600-82456600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr15:82430400-82452400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr15:82430400-82455200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:82431200-82448200	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr15:82431200-82450000	Weak transcription	GM12878-XiMat	blood
14	chr15:82431200-82452400	Weak transcription	Esophagus	oesophagus
15	chr15:82431200-82455000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr15:82431200-82461200	Weak transcription	Small Intestine	intestine
17	chr15:82432600-82445400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr15:82432600-82454800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr15:82432600-82454800	Weak transcription	Colon Smooth Muscle	Colon
20	chr15:82432600-82457800	Weak transcription	Fetal Lung	lung
21	chr15:82432600-82476400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:82432600-82552800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr15:82433400-82453800	Weak transcription	Stomach Mucosa	stomach
24	chr15:82433400-82458400	Weak transcription	Fetal Kidney	kidney
25	chr15:82434600-82444800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:82438400-82456800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr15:82439400-82444200	Weak transcription	NHLF	lung
28	chr15:82439400-82455400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr15:82439800-82451200	Weak transcription	NH-A	brain
30	chr15:82439800-82454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:82439800-82465600	Weak transcription	K562	blood
32	chr15:82440200-82444800	Strong transcription	Primary B cells from cord blood	blood
33	chr15:82440200-82445400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:82440400-82452000	Weak transcription	Osteobl	bone
35	chr15:82440400-82455000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:82440400-82458200	Weak transcription	HUVEC	blood vessel
37	chr15:82440600-82444800	Strong transcription	Primary hematopoietic stem cells	blood
38	chr15:82440800-82445400	Strong transcription	HSMM	muscle
39	chr15:82440800-82452200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr15:82440800-82453000	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr15:82441400-82469600	Weak transcription	Fetal Brain Male	brain
42	chr15:82441800-82444600	Strong transcription	Liver	Liver
43	chr15:82441800-82444600	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr15:82441800-82444800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:82441800-82445200	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr15:82441800-82445600	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr15:82442000-82444600	Strong transcription	Fetal Intestine Large	intestine
48	chr15:82442000-82445400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr15:82442200-82444600	Strong transcription	HSMMtube	muscle
50	chr15:82442200-82444800	Strong transcription	Duodenum Mucosa	Duodenum

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