Variant report

Variant	rs56133446
Chromosome Location	chr5:167502160-167502161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10053703	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10516043	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11134487	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12055092	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12188085	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12188092	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13358864	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17051818	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17051821	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17069767	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17069814	0.81[EUR][1000 genomes]
rs34118922	0.81[ASN][1000 genomes]
rs35613923	0.82[ASN][1000 genomes]
rs56114918	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57617749	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66885574	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72824985	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72824988	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9313395	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167483200-167502400	Weak transcription	Fetal Heart	heart
2	chr5:167491800-167509200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:167497800-167504400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:167499000-167502600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:167500600-167504800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:167500800-167502600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr5:167501000-167512800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:167501200-167503400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:167501600-167514800	Weak transcription	NHEK	skin
10	chr5:167501800-167502200	Enhancers	Primary hematopoietic stem cells	blood
11	chr5:167501800-167503600	Weak transcription	Right Ventricle	heart
12	chr5:167501800-167503800	Weak transcription	Left Ventricle	heart
13	chr5:167501800-167504400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr5:167501800-167511800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:167502000-167504400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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