Variant report

Variant	rs17051821
Chromosome Location	chr5:167501163-167501164
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10053703	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10516043	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11134487	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12055092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12188085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12188092	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13358864	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17051818	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17069767	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17069814	0.82[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17069822	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2337119	0.85[YRI][hapmap]
rs2617971	0.83[YRI][hapmap]
rs34118922	0.89[ASN][1000 genomes]
rs35613923	0.90[ASN][1000 genomes]
rs56114918	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56133446	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57617749	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66885574	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72824985	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72824988	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7730804	0.85[YRI][hapmap]
rs7732210	0.93[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9313395	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167483200-167502400	Weak transcription	Fetal Heart	heart
2	chr5:167491800-167509200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:167497800-167504400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:167498600-167501600	Strong transcription	NHEK	skin
5	chr5:167499000-167502600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:167500400-167501800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:167500600-167501400	Enhancers	NH-A	brain
8	chr5:167500600-167501600	Enhancers	HSMM	muscle
9	chr5:167500600-167501600	Enhancers	HSMMtube	muscle
10	chr5:167500600-167504800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:167500800-167501200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:167500800-167501400	Enhancers	Osteobl	bone
13	chr5:167500800-167501600	Enhancers	Dnd41	blood
14	chr5:167500800-167501800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:167500800-167501800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr5:167500800-167501800	Enhancers	Fetal Muscle Leg	muscle
17	chr5:167500800-167501800	Genic enhancers	Left Ventricle	heart
18	chr5:167500800-167501800	Enhancers	Right Ventricle	heart
19	chr5:167500800-167502000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:167500800-167502000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:167500800-167502600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr5:167501000-167501800	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr5:167501000-167501800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr5:167501000-167512800	Weak transcription	Placenta Amnion	Placenta Amnion

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