Variant report

Variant	rs57617749
Chromosome Location	chr5:167505303-167505304
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10053703	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10516043	0.81[AMR][1000 genomes]
rs11134487	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12055092	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12188085	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12188092	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13358864	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17051818	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17051821	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17069767	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17069814	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17069822	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56114918	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56133446	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66885574	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72824985	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72824988	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9313395	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167491800-167509200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:167501000-167512800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:167501600-167514800	Weak transcription	NHEK	skin
4	chr5:167501800-167511800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:167504000-167511600	Weak transcription	Left Ventricle	heart
6	chr5:167504400-167509800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:167504400-167512600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:167505200-167515400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links